Hi, I'm running DeviCNV with BAM files from 60 samples, and the very first step "STEP1_calculateReadsDepthOfAmp" is taking ~3 days per sample. Each BAM file is around 2 GB. Is this runtime to be expected?
Can the script perhaps be parallelized to make it run faster?
Thanks very much,
Rajat
Hi, I'm running DeviCNV with BAM files from 60 samples, and the very first step "STEP1_calculateReadsDepthOfAmp" is taking ~3 days per sample. Each BAM file is around 2 GB. Is this runtime to be expected?
Can the script perhaps be parallelized to make it run faster?
Thanks very much,
Rajat