fishplotpy/pyproject.toml at main · Sayitobar/fishplotpy · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
# --- CORE METADATA ---
name = "fishplotpy"
version = "1.0"

# --- AUTHOR ---
authors = [
  { name="Baris Sayitoglu", email="bsayitoglu@gmail.com" },
]

# --- DESCRIPTION / README / LICENSE ---
description = "Python implementation for visualizing clonal evolution dynamics (fish plots)."
readme = "README.md"
license = { file="LICENSE" }

# --- PYTHON VERSION / CLASSIFIERS ---
requires-python = ">=3.8"
classifiers = [
    # Status classifiers: https://pypi.org/classifiers/
    "Development Status :: 4 - Beta",
    # Audience / Topic
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Visualization",
    # License
    "License :: OSI Approved :: Apache Software License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    # OS / Typing
    "Operating System :: OS Independent",
    "Typing :: Typed",
]

# --- DEPENDENCIES ---
dependencies = [
    "numpy",
    "pandas",
    "matplotlib>=3.7",
    "scipy",
    "packaging", # used for version check in draw_legend
]

# --- PROJECT URLs ---
[project.urls]
"Homepage" = "https://github.com/Sayitobar/fishplotpy"
"Repository" = "https://github.com/Sayitobar/fishplotpy"
"Bug Tracker" = "https://github.com/Sayitobar/fishplotpy/issues"
"Original R Package" = "https://github.com/chrisamiller/fishplot"

# --- Optional Development Dependencies ---
[project.optional-dependencies]
dev = [
    "pytest",
    "pytest-mpl",
]