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References

1. CD8 T cell development

1.1 Review

[ 2021_JEM_Kaech ] The architectural design of CD8+ T cell responses in acute and chronic infection: Parallel structures with divergent fates

1.2 Acute

[ 2020_NAT_IMMUNOL_Utzschneider ] Early precursor T cells establish and propagate T cell exhaustion in chronic infection

1.3 Chronic

2. IL2 signaling

3. Chromatin remodeling

[ 2019_JEM_Yukawa ] AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation

[2011_NAR_Helenius] Requirement of TFIIH kinase subunit Mat1 for RNA Pol II C-terminal domain Ser5 phosphorylation, transcription and mRNA turnover

[2018_NAT_REV_IMMUNOL_Henning] Epigenetic control of CD8+ T cell differentiation

4. Single cell

5. Other

5.1 Viral infection models

[ 2011_CURR_PROTOC_MICROBIOL_Welsh ] LCMV: Propagation, quantitation, and storage [ 2003_J_VIRAL_Wherry ] Viral persistence alters CD8 T-cell immunodominance and tissue distribution and results in distinct stages of functional impairment

  1. [ 2020_NAT_IMMUNOL_Schober ] Reverse TCR repertoire evolution toward dominant low-affinity clones during chronic CMV infection

  2. [ 2021_NAT_IMMUNOL_Yao ] BACH2 enforces the transcriptional and epigenetic programs of stem-like CD8+ T cells

  3. [ 2018_Bioinformatics_Jin ] scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data

  4. [ 2020_PNAS_Maslova ] Deep learning of immune cell differentiation

  5. [ 2021_BioRxiv_Cruz ] A stochastic pooling motif mediates information transfer from receptor assemblies into NF-κB

  6. [ 2012_Blood_Gil ] Regulating type 1 IFN effects in CD8 T cells during viral infections: changing STAT4 and STAT1 expression for function

  7. [ 2006_Blood_Gil ] Modulation of STAT1 protein levels: a mechanism shaping CD8 T-cell responses in vivo

  8. [ 2019_J_VIROL_Qian ] A Human STAT1 Gain-of-Function Mutation Impairs CD8+ T Cell Responses against Gammaherpesvirus 68