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<title>T cell ATACseq & ChIPseq Tracks</title>
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<h1> T cell ATACseq & ChIPseq Tracks </h1>
<p style="color:gray"> Maintained by: <a href="https://pipkin-lab.com/">Pipkin Lab</a>; Contact: <a href="mpipkin@scripps.edu"> mpipkin@scripps.edu </a>; Github: <a href="https://github.com/ScrippsPipkinLab/GenomeTracks">ScrippsPipkinLab</a> </p>
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<h3> ATACseq of murine CD8 T cells </h3>
<ul>
<li>In vitro TCR stimulation time points: 0, 2, 6, 12, 24 hours. WT and Runx3KO P14 cells. <a href="https://www.cell.com/immunity/comments/S1074-7613(18)30126-2">Link to article</a> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111149">GSE111149</a> </li>
<li>In vitro cultured CD8 T cells at high(100U) / low(10U) IL-2 levels, with different combinations of PMA/Iono/CsA stimulation <a href="https://www.sciencedirect.com/science/article/pii/S1074761316304393">Link to article</a> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88987">GSE88987</a> </li>
<li>In vivo sorted CD8 T cells phenotypes: Naive, MPEC, SLEC, Memory,Exhausted <a href="https://www.sciencedirect.com/science/article/pii/S1074761316304393">Link to article</a> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88987">GSE88987</a> </li>
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<h3> Reference ChIPseq of key transcription factors </h3>
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<li>Bach2</li>
<li>BATF</li>
<li>cJun</li>
<li>IRF4</li>
<li>JunB</li>
<li>JunD</li>
<li>Runx3 day6 (d6)</li>
<li>Runx3 ex vivo</li>
<li>Stat5a</li>
<li>Stat5b</li>
<li>Tbet</li>
<li>Tcf7</li>
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