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Description
when I run the demo
omic1 = read.table(file='data/sample_omic1') omic2 = read.table(file='data/sample_omic2') omics.list = list(omic1, omic2) clustering = nemo.clustering(omics.list)
NEMO raise an error
Error in sort(sim.row, decreasing = T) : 'decreasing' must be a length-1 logical vector. Did you intend to set 'partial'? 8. stop("'decreasing' must be a length-1 logical vector.\nDid you intend to set 'partial'?") 7. sort(sim.row, decreasing = T) at NEMO.R#68 6. FUN(newX[, i], ...) 5. apply(sim.datum, 1, function(sim.row) { returned.row = sim.row threshold = sort(sim.row, decreasing = T)[k[i]] returned.row[sim.row < threshold] = 0 ... at NEMO.R#66 4. FUN(X[[i]], ...) 3. lapply(1:length(raw.data), function(i) { sim.datum = sim.data[[i]] non.sym.knn = apply(sim.datum, 1, function(sim.row) { returned.row = sim.row ... at NEMO.R#64 2. nemo.affinity.graph(omics.list, k = num.neighbors) at NEMO.R#105 1. nemo.clustering(omics.list)