From 7a373d735db839d829cd21b5aaf6fcd3e4399e46 Mon Sep 17 00:00:00 2001 From: Enrique Hernandez <96093685+enriquehdez98@users.noreply.github.com> Date: Wed, 4 Mar 2026 12:54:37 -0600 Subject: [PATCH] Fix human-mistakes into the tutorial visualization - Correct ordering in some slides. - Text format with line break characters. --- .../Translations/VisualizationTutorial.json | 90 +++--- .../Translations/text_dict_default.json | 12 +- .../Translations/text_dict_en-US.json | 273 +++++++++++------- 3 files changed, 226 insertions(+), 149 deletions(-) diff --git a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/VisualizationTutorial.json b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/VisualizationTutorial.json index ce3ad8ef..378dc5cc 100644 --- a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/VisualizationTutorial.json +++ b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/VisualizationTutorial.json @@ -3,7 +3,7 @@ "author": "Sonia Pujol, Ph.D.", "date": "24/11/2024", "desc": "This tutorial guides users through 3D Slicer s advanced visualization features, including DICOM data import, volume rendering, slice manipulation, and model clipping techniques.", - "dependencies": [], + "TMversion": "1.1", "TutorialMaker_version": "1.1", "slides": [ { @@ -360,12 +360,12 @@ "widgetPath": "TutorialAnnotator/BlankPage", "type": "TextBox", "offset": [ - 293.4960767218832, + 292.90412876137157, 360.0 ], "optional": [ - 0.7689625108979947, - 0.8463687150837989 + 0.768369489153254, + 0.8453038674033149 ], "custom": { "textAlign": "center", @@ -1758,22 +1758,22 @@ { "ImagePath": "38_Viewing3Dmodels.png", "SlideCode": [ - "19/0" + "18/0" ], "SlideLayout": "Screenshot", "SlideTitle": "38_Viewing3Dmodels_title", "SlideDesc": "38_Viewing3Dmodels_body", "Annotations": [ { - "widgetPath": 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"qSlicerMainWindow/PanelDockWidget/dockWidgetContents/ModulePanel/ScrollArea/qt_scrollarea_viewport/scrollAreaWidgetContents/ModelsModuleWidget/ResizableFrame/SubjectHierarchyTreeView/XtreeViewWidget_24", + "type": "Rectangle", "offset": [ - 246.21185701830836, - -5.871508379888269 + -1.8404533565823904, + -1.4594972067039294 ], "optional": [ - 0.7855274629468177, - 0.770949720670391 + 0.10810810810810811, + 0.44553072625698326 ], - "custom": { - "textColor": "#000000", - "textAlign": "right", - "textFit": false - }, + "custom": {}, "penSettings": { - "color": "#cbfecb", + "color": "#fe9800", "thickness": 4, "fontSize": 24 }, - "text": "38_TextBox_1" + "text": "38_Rectangle_1" } ] }, { "ImagePath": "39_Viewing3Dmodels.png", "SlideCode": [ - "18/0" + "19/0" ], "SlideLayout": "Screenshot", "SlideTitle": "39_Viewing3Dmodels_title", "SlideDesc": "39_Viewing3Dmodels_body", "Annotations": [ { - "widgetPath": "qSlicerMainWindow/PanelDockWidget/dockWidgetContents/ModulePanel/ScrollArea/qt_scrollarea_viewport/scrollAreaWidgetContents/ModelsModuleWidget/ResizableFrame/SubjectHierarchyTreeView/XtreeViewWidget_24", + "widgetPath": "qSlicerMainWindow/PanelDockWidget/dockWidgetContents/ModulePanel/ScrollArea/qt_scrollarea_viewport/scrollAreaWidgetContents/ModelsModuleWidget/DisplayButton/ModelDisplayWidget/SliceDisplayCollapsibleGroupBox/SliceIntersectionOpacitySlider/Slider/QSlider:0", "type": "ArrowText", "offset": [ - -1.8404533565823904, - -1.4594972067039294 + -0.40453356582388267, + -0.8701117318435081 ], "optional": [ - 0.14559721011333915, - 0.44273743016759776 + 0.12118570183086312, + 0.6340782122905028 ], "custom": {}, "penSettings": { @@ -1837,23 +1833,27 @@ "text": "39_ArrowText_0" }, { - "widgetPath": "qSlicerMainWindow/PanelDockWidget/dockWidgetContents/ModulePanel/ScrollArea/qt_scrollarea_viewport/scrollAreaWidgetContents/ModelsModuleWidget/ResizableFrame/SubjectHierarchyTreeView/XtreeViewWidget_24", - "type": "Rectangle", + "widgetPath": "qSlicerMainWindow/CentralWidget/CentralWidgetLayoutFrame/QSplitter:0/QWidget:0/qMRMLSliceWidgetYellow/frame/SliceView/ctkVTKOpenGLNativeWidget:0", + "type": "TextBox", "offset": [ - -1.8404533565823904, - -1.4594972067039294 + 246.21185701830836, + -5.871508379888269 ], "optional": [ - 0.10810810810810811, - 0.44553072625698326 + 0.7855274629468177, + 0.770949720670391 ], - "custom": {}, + "custom": { + "textColor": "#000000", + "textAlign": "right", + "textFit": false + }, "penSettings": { - "color": "#fe9800", + "color": "#cbfecb", "thickness": 4, "fontSize": 24 }, - "text": "39_Rectangle_1" + "text": "39_TextBox_1" } ] }, @@ -2010,12 +2010,12 @@ "widgetPath": "qSlicerMainWindow/PanelDockWidget/dockWidgetContents/ModulePanel/ScrollArea/qt_scrollarea_viewport/scrollAreaWidgetContents/ModelsModuleWidget/ClippingButton/MRMLClipNodeDisplayWidget/checkBox_Clipping", "type": "ArrowText", "offset": [ - -0.1429816913687887, - -0.09916201117312085 + -1.811056682995087, + -0.5966850828729093 ], "optional": [ - 0.12118570183086312, - 0.835195530726257 + 0.20293911826452066, + 0.6450276243093923 ], "custom": {}, "penSettings": { @@ -2130,12 +2130,12 @@ "widgetPath": "TutorialAnnotator/BlankPage", "type": "TextBox", "offset": [ - 292.9264909847434, + 292.90412876137157, 360.0 ], "optional": [ - 0.768377253814147, - 0.8463687150837989 + 0.768369489153254, + 0.8453038674033149 ], "custom": { "textAlign": "center", diff --git a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_default.json b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_default.json index cd0ea872..54be5270 100644 --- a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_default.json +++ b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_default.json @@ -24,7 +24,7 @@ "5_slide_title": "", "5_slide_body": "", "5_TextBox_0": "Disclaimer", - "5_TextBox_1": "• 3D Slicer is a free open source software application distributed under a BSD style license. \n\n\n• The software is not FDA approved or CE-Marked, and is for research use only.\nTutorial Outline", + "5_TextBox_1": "• 3D Slicer is a free open source software application distributed under a BSD style license. \n\n\n• The software is not FDA approved or CE-Marked, and is for research use only.\n", "6_slide_title": "", "6_slide_body": "", "6_TextBox_0": "Tutorial Outline", @@ -140,12 +140,12 @@ "37_ArrowText_1": "Select the Models module \nin the list of models", "38_Viewing3Dmodels_title": "Viewing 3D models", "38_Viewing3Dmodels_body": "", - "38_ArrowText_0": "Lower the opacity of \nthe Skin model using \nthe visibility slider", - "38_TextBox_1": "The skull bone and \neyeballs models appear \nthrough the skin", + "38_ArrowText_0": "Slicer displays the list of \n3D models loaded in the \nscene\n\nSelect the model Skin.vtk", + "38_Rectangle_1": "", "39_Viewing3Dmodels_title": "Viewing 3D models", "39_Viewing3Dmodels_body": "", - "39_ArrowText_0": "Slicer displays the list of \n3D models loaded in the \nscene\n\nSelect the model Skin.vtk", - "39_Rectangle_1": "", + "39_ArrowText_0": "Lower the opacity of \nthe Skin model using \nthe visibility slider", + "39_TextBox_1": "The skull bone and \neyeballs models appear \nthrough the skin", "40_Viewing3Dmodels_title": "Viewing 3D models", "40_Viewing3Dmodels_body": "", "40_Rectangle_0": "", @@ -168,7 +168,7 @@ "45_slide_title": "", "45_slide_body": "", "45_TextBox_0": "Conclusion", - "45_TextBox_1": "• 3D Slicer provides advanced functionalities for loading and viewing 3D medical imaging data\n\n• The tutorial demonstrates how to use volume \nrendering and 3D surface modeling for \ninteractive visualization of CT and MRI data\n\n\nContact: spujol@bwh.harvard.edu", + "45_TextBox_1": "• 3D Slicer provides advanced functionalities for loading and viewing 3D medical imaging data\n\n• The tutorial demonstrates how to use volume rendering and 3D surface modeling for interactive visualization of CT and MRI data\n\n\nContact: spujol@bwh.harvard.edu", "46_slide_title": " ", "46_slide_body": " ", "46_TextBox_0": "Acknowledgements", diff --git a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_en-US.json b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_en-US.json index fafa50dc..54be5270 100644 --- a/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_en-US.json +++ b/Tutorials/STC-VIS-101_VisualizationTutorial/Translations/text_dict_en-US.json @@ -1,99 +1,176 @@ -{ - "1_TextBox_1": "This tutorial is an introduction to the basics of loading and viewing DICOM images and 3D models in 3D Slicer.", - "3_TextBox_0": "Tutorial materials", - "4_TextBox_0": "Tutorial dataset", - "33_TextBox_0": "Tutorial dataset", - "5_TextBox_0": "Disclaimer", - "6_TextBox_0": "Tutorial Outline", - "8_LoadingaDICOMvolume_title": "Loading a DICOM volume", - "9_LoadingaDICOMvolume_title": "Loading a DICOM volume", - "8_TextBox_1": "The patient1 study contains a CT Thorax Abdomen dataset", - "11_ArrowText_2": "Select the module \nVolumes", - "10_VisualizingDICOMimages_title": "Visualizing DICOM images", - "11_VisualizingDICOMimages_title": "Visualizing DICOM images", - "12_VisualizingDICOMimages_title": "Visualizing DICOM images", - "13_VisualizingDICOMimages_title": "Visualizing DICOM images", - "14_VisualizingDICOMimages_title": "Visualizing DICOM images", - "15_VisualizingDICOMimages_title": "Visualizing DICOM images", - "16_VisualizingDICOMimages_title": "Visualizing DICOM images", - "17_VisualizingDICOMimages_title": "Visualizing DICOM images", - "18_VisualizingDICOMimages_title": "Visualizing DICOM images", - "16_TextBox_0": "Slicer switches the layout \nto Conventional \nWidescreen layout", - "17_TextBox_0": "Use the right mouse button in the \n3D Viewer to zoom in and out", - "19_3DViewerController_title": "3D Viewer Controller", - "20_3DViewerController_title": "3D Viewer Controller", - "22_TextBox_0": "Volume Rendering", - "23_VolumeRendering_title": "Volume Rendering", - "24_VolumeRendering_title": "Volume Rendering", - "25_VolumeRendering_title": "Volume Rendering", - "26_VolumeRendering_title": "Volume Rendering", - "27_VolumeRendering_title": "Volume Rendering", - "28_VolumeRendering_title": "Volume Rendering", - "29_VolumeRendering_title": "Volume Rendering", - "30_VolumeRendering_title": "Volume Rendering", - "31_VolumeRendering_title": "Volume Rendering", - "24_TextBox_2": "Select VTK GPU Ray Casting Rendering\nClick on the eye icon in the Volume tab to display \nthe volume rendered image in the 3D viewer", - "26_ArrowText_0": "Click on Display ROI to \ndisplay a region of interest \n(ROI) in the 3D viewer and \ncheck the option Enable", - "28_ArrowText_0": "Click on the eye icon to \ndisplay the volume rendered \nimage", - "29_TextBox_0": "Slicer displays the \nvolume rendered \nimage of the left kidney ", - "30_TextBox_0": "Extend the ROI to generate \na volume rendered image of \nthe right kidney", - "34_TextBox_0": "Slicer Scene", - "35_LoadingaScene_title": "Loading a Scene", - "35_TextBox_0": "Slicer displays a 3D \nsurface model of the \nhead and 2D MRI slices", - "36_Viewing3Dmodels_title": "Viewing 3D models", - "37_Viewing3Dmodels_title": "Viewing 3D models", - "38_Viewing3Dmodels_title": "Viewing 3D models", - "39_Viewing3Dmodels_title": "Viewing 3D models", - "40_Viewing3Dmodels_title": "Viewing 3D models", - "36_ArrowText_0": "Position the cursor over \nthe pin icon to reveal the \nslice menu and click on \nthe eye icon to display the \naxial slice in the 3D viewer", - "41_Interactingwith3Dmodels_title": "Interacting with 3D models", - "42_Interactingwith3Dmodels_title": "Interacting with 3D models", - "43_Interactingwith3Dmodels_title": "Interacting with 3D models", - "44_Interactingwith3Dmodels_title": "Interacting with 3D models", - "38_ArrowText_0": "Lower the opacity of \nthe Skin model using \nthe visibility slider", - "38_TextBox_1": "The skull bone and \neyeballs models appear \nthrough the skin", - "40_TextBox_2": "The white matter and \noptic nerve models \nappear through the skin", - "40_ArrowText_1": "Select the skull bone \nmodel and click on the \neye icon to turn off its \nvisibility", - "0_TextBox_0": "Basics of Data Loading and 3D Visualization in 3D Slicer", - "0_TextBox_1": "Author: Sonia Pujol, Ph.D.", - "0_TextBox_2": "24/11/2024", - "0_TextBox_3": "Assistant Professor of Radiology Brigham and Women’s Hospital Harvard Medical School", - "1_TextBox_0": "Overall Goal", - "2_TextBox_0": "Learning Objectives", - "2_TextBox_1": " • Following this tutorial, you will be able\n\n• to load and visualize DICOM images in Slicer\n\n• to perform volume rendering of CT data\n\n• to load and visualize 3D models reconstructed from MRI data", - "3_TextBox_1": "• 3D Slicer version 5.10\n\n• 3D VisualizationDataSet.zip", - "4_TextBox_1": "The file 3DVisualizationDataset.zip contains two directories:\n\n- dataset1_Thorax_Abdomen \n- dataset2_Head\n\nUnzip the file 3DVisualizationDataset.zip on your computer to access the datasets", - "5_TextBox_1": "• 3D Slicer is a free open source software application distributed under a BSD style license. \n\n\n• The software is not FDA approved or CE-Marked, and is for research use only.\nTutorial Outline", - "6_TextBox_1": "• Part 1: Loading and Viewing DICOM data\n\n• Part 2: Volume Rendering\n\n\n• Part 3: Loading and Viewing 3D models", - "7_TextBox_0": "Part 1: DICOM Data Loading", - "8_TextBox_0": "Slicer displays the user interface of the DICOM module", - "9_ArrowText_1": "Select patient1 and click on Load \nto load the dataset in Slicer", - "10_TextBox_0": "Slicer displays the axial, coronal \nand sagittal images of the CT \nThorax Abdomen dataset ", - "11_ArrowText_1": "Left click on DICOM to display \nthe list of modules of Slicer", - "12_ArrowText_0": "Click on the CT-abdomen \npreset to automatically adjust \nthe window/level display of the \nCT dataset", - "13_TextBox_1": "Position the mouse cursor \nover the red banner in the \nRed Viewer to display the slice \nmenu.\n\n\nClick on the Links icon to link \nthe slice controls across all \nSlice Viewers. \n\n\nClick on the Eye icon to\ndisplay the three anatomical \nslices in the 3D Viewer", - "14_TextBox_0": "The three anatomical slices \nappear in the 3D viewer.", - "15_ArrowText_0": "Click on the Slicer layout menu \nicon, and select the \nConventional Widescreen layout", - "18_TextBox_0": "Use the left mouse button in the \n3D Viewer to rotate the images", - "19_TextBox_1": "Position the mouse cursor over \nthe pin icon in the blue banner \nof the 3D viewer window to \ndisplay the 3DView controller\n\nClick on the second icon on the \ntop row of the 3DView \ncontroller to center the 3D view \non the scene", - "20_ArrowText_1": "Select the Volume Rendering \nmodule in the list of modules ", - "21_TextBox_0": "Part 2: Volume Rendering", - "22_TextBox_1": "• Volume rendering \ntechniques enable 3D \nvisualization of 3D \ndatasets\n\n• The Volume Rendering \nmodule in Slicer enables \ninteractive 3D visualization \nof DICOM images", - "23_ArrowText_0": "Click on Preset in the Display tab \nand select the preset CT-Cardiac3 ", - "25_ArrowText_0": "Use the shift slider to \nchange the transfer \nfunction and display the\naorta", - "27_TextBox_0": "Turn off the visibility of the \naxial, sagittal and coronal \nslices in the 2D viewer \n\n\nPosition the ROI around the \nleft kidney using the color \nhandles", - "31_ArrowText_1": "Click on File, then Close Scene\nin the main menu", - "32_TextBox_0": "Part 3: Loading and \nviewing 3D models\n", - "33_TextBox_1": "• The directory dataset2_Head contains the Slicer scene called Head_scene.mrb\n\n• The scene contains 3D models from the SPL brain atlas developed by the department of Radiology at Brigham and Women’s Hospital, Harvard Medical School (NIH P41 RR013218, NIH R01 MH05074)", - "34_TextBox_1": "Slicer stores all loaded data in a repository called a scene\n\n\nEach data set, such as an image volume, surface model, or point set, is represented as a node in a Slicer scene.\n\n\nAll Slicer modules operate on the data stored in a Slicer scene.", - "37_ArrowText_1": "Select the Models module \nin the list of models", - "39_ArrowText_0": "Slicer displays the list of \n3D models loaded in the \nscene\n\nSelect the model Skin.vtk", - "41_ArrowText_0": "Click on the eye icon to \ndisplay the coronal slice \nin the 3D viewer", - "42_ArrowText_2": "Select the hemispheric \nwhite matter model and \nselect the option Clipping", - "43_TextBox_0": "Move the coronal slice \nposteriorily to display the \noptic chiasm", - "44_TextBox_0": "Slicer displays a 3D view of \nthe optic chiasm", - "45_TextBox_1": "• 3D Slicer provides advanced functionalities for loading and viewing 3D medical imaging data\n\n• The tutorial demonstrates how to use volume \nrendering and 3D surface modeling for \ninteractive visualization of CT and MRI data\n\n\nContact: spujol@bwh.harvard.edu", - "46_TextBox_0": "Acknowledgements", - "46_TextBox_1": "Neuroimage Analysis Center (NIBIB P41 EB015902)", - "45_TextBox_0": "Conclusion" +{ + "0_slide_title": " ", + "0_slide_body": " ", + "0_TextBox_0": "Basics of Data Loading and 3D Visualization in 3D Slicer", + "0_TextBox_1": "Author: Sonia Pujol, Ph.D.", + "0_TextBox_2": "24/11/2024", + "0_TextBox_3": "Assistant Professor of Radiology Brigham and Women’s Hospital Harvard Medical School", + "1_slide_title": "", + "1_slide_body": "", + "1_TextBox_0": "Overall Goal", + "1_TextBox_1": "This tutorial is an introduction to the basics of loading and viewing DICOM images and 3D models in 3D Slicer.", + "2_slide_title": "", + "2_slide_body": "", + "2_TextBox_0": "Learning Objectives", + "2_TextBox_1": " • Following this tutorial, you will be able\n\n• to load and visualize DICOM images in Slicer\n\n• to perform volume rendering of CT data\n\n• to load and visualize 3D models reconstructed from MRI data", + "3_slide_title": "", + "3_slide_body": "", + "3_TextBox_0": "Tutorial materials", + "3_TextBox_1": "• 3D Slicer version 5.10\n\n• 3D VisualizationDataSet.zip", + "4_slide_title": "", + "4_slide_body": "", + "4_TextBox_0": "Tutorial dataset", + "4_TextBox_1": "The file 3DVisualizationDataset.zip contains two directories:\n\n- dataset1_Thorax_Abdomen \n- dataset2_Head\n\nUnzip the file 3DVisualizationDataset.zip on your computer to access the datasets", + "5_slide_title": "", + "5_slide_body": "", + "5_TextBox_0": "Disclaimer", + "5_TextBox_1": "• 3D Slicer is a free open source software application distributed under a BSD style license. \n\n\n• The software is not FDA approved or CE-Marked, and is for research use only.\n", + "6_slide_title": "", + "6_slide_body": "", + "6_TextBox_0": "Tutorial Outline", + "6_TextBox_1": "• Part 1: Loading and Viewing DICOM data\n\n• Part 2: Volume Rendering\n\n\n• Part 3: Loading and Viewing 3D models", + "7_slide_title": "", + "7_slide_body": "", + "7_TextBox_0": "Part 1: DICOM Data Loading", + "8_LoadingaDICOMvolume_title": "Loading a DICOM volume", + "8_LoadingaDICOMvolume_body": "", + "8_TextBox_0": "Slicer displays the user interface of the DICOM module", + "8_TextBox_1": "The patient1 study contains a CT Thorax Abdomen dataset", + "9_LoadingaDICOMvolume_title": "Loading a DICOM volume", + "9_LoadingaDICOMvolume_body": "", + "9_Rectangle_0": "", + "9_ArrowText_1": "Select patient1 and click on Load \nto load the dataset in Slicer", + "10_VisualizingDICOMimages_title": "Visualizing DICOM images", + "10_VisualizingDICOMimages_body": "", + "10_TextBox_0": "Slicer displays the axial, coronal \nand sagittal images of the CT \nThorax Abdomen dataset ", + "11_VisualizingDICOMimages_title": "Visualizing DICOM images", + "11_VisualizingDICOMimages_body": "", + "11_Rectangle_0": "", + "11_ArrowText_1": "Left click on DICOM to display \nthe list of modules of Slicer", + "11_ArrowText_2": "Select the module \nVolumes", + "12_VisualizingDICOMimages_title": "Visualizing DICOM images", + "12_VisualizingDICOMimages_body": "", + "12_ArrowText_0": "Click on the CT-abdomen \npreset to automatically adjust \nthe window/level display of the \nCT dataset", + "13_VisualizingDICOMimages_title": "Visualizing DICOM images", + "13_VisualizingDICOMimages_body": "", + "13_Arrow_0": "", + "13_TextBox_1": "Position the mouse cursor \nover the red banner in the \nRed Viewer to display the slice \nmenu.\n\n\nClick on the Links icon to link \nthe slice controls across all \nSlice Viewers. \n\n\nClick on the Eye icon to\ndisplay the three anatomical \nslices in the 3D Viewer", + "14_VisualizingDICOMimages_title": "Visualizing DICOM images", + "14_VisualizingDICOMimages_body": "", + "14_TextBox_0": "The three anatomical slices \nappear in the 3D viewer.", + "15_VisualizingDICOMimages_title": "Visualizing DICOM images", + "15_VisualizingDICOMimages_body": "", + "15_ArrowText_0": "Click on the Slicer layout menu \nicon, and select the \nConventional Widescreen layout", + "15_Rectangle_1": "", + "16_VisualizingDICOMimages_title": "Visualizing DICOM images", + "16_VisualizingDICOMimages_body": "", + "16_TextBox_0": "Slicer switches the layout \nto Conventional \nWidescreen layout", + "17_VisualizingDICOMimages_title": "Visualizing DICOM images", + "17_VisualizingDICOMimages_body": "", + "17_TextBox_0": "Use the right mouse button in the \n3D Viewer to zoom in and out", + "18_VisualizingDICOMimages_title": "Visualizing DICOM images", + "18_VisualizingDICOMimages_body": "", + "18_TextBox_0": "Use the left mouse button in the \n3D Viewer to rotate the images", + "19_3DViewerController_title": "3D Viewer Controller", + "19_3DViewerController_body": "", + "19_Arrow_0": "", + "19_TextBox_1": "Position the mouse cursor over \nthe pin icon in the blue banner \nof the 3D viewer window to \ndisplay the 3DView controller\n\nClick on the second icon on the \ntop row of the 3DView \ncontroller to center the 3D view \non the scene", + "20_3DViewerController_title": "3D Viewer Controller", + "20_3DViewerController_body": "", + "20_Rectangle_0": "", + "20_ArrowText_1": "Select the Volume Rendering \nmodule in the list of modules ", + "21_slide_title": "", + "21_slide_body": "", + "21_TextBox_0": "Part 2: Volume Rendering", + "22_slide_title": "", + "22_slide_body": "", + "22_TextBox_0": "Volume Rendering", + "22_TextBox_1": "• Volume rendering \ntechniques enable 3D \nvisualization of 3D \ndatasets\n\n• The Volume Rendering \nmodule in Slicer enables \ninteractive 3D visualization \nof DICOM images", + "23_VolumeRendering_title": "Volume Rendering", + "23_VolumeRendering_body": "", + "23_ArrowText_0": "Click on Preset in the Display tab \nand select the preset CT-Cardiac3 ", + "24_VolumeRendering_title": "Volume Rendering", + "24_VolumeRendering_body": "", + "24_Arrow_0": "", + "24_Arrow_1": "", + "24_TextBox_2": "Select VTK GPU Ray Casting Rendering\nClick on the eye icon in the Volume tab to display \nthe volume rendered image in the 3D viewer", + "25_VolumeRendering_title": "Volume Rendering", + "25_VolumeRendering_body": "", + "25_ArrowText_0": "Use the shift slider to \nchange the transfer \nfunction and display the\naorta", + "26_VolumeRendering_title": "Volume Rendering", + "26_VolumeRendering_body": "", + "26_ArrowText_0": "Click on Display ROI to \ndisplay a region of interest \n(ROI) in the 3D viewer and \ncheck the option Enable", + "27_VolumeRendering_title": "Volume Rendering", + "27_VolumeRendering_body": "", + "27_TextBox_0": "Turn off the visibility of the \naxial, sagittal and coronal \nslices in the 2D viewer \n\n\nPosition the ROI around the \nleft kidney using the color \nhandles", + "27_Arrow_1": "", + "28_VolumeRendering_title": "Volume Rendering", + "28_VolumeRendering_body": "", + "28_ArrowText_0": "Click on the eye icon to \ndisplay the volume rendered \nimage", + "29_VolumeRendering_title": "Volume Rendering", + "29_VolumeRendering_body": "", + "29_TextBox_0": "Slicer displays the \nvolume rendered \nimage of the left kidney ", + "30_VolumeRendering_title": "Volume Rendering", + "30_VolumeRendering_body": "", + "30_TextBox_0": "Extend the ROI to generate \na volume rendered image of \nthe right kidney", + "31_VolumeRendering_title": "Volume Rendering", + "31_VolumeRendering_body": "", + "31_Rectangle_0": "", + "31_ArrowText_1": "Click on File, then Close Scene\nin the main menu", + "32_slide_title": "", + "32_slide_body": "", + "32_TextBox_0": "Part 3: Loading and \nviewing 3D models\n", + "33_slide_title": "", + "33_slide_body": "", + "33_TextBox_0": "Tutorial dataset", + "33_TextBox_1": "• The directory dataset2_Head contains the Slicer scene called Head_scene.mrb\n\n• The scene contains 3D models from the SPL brain atlas developed by the department of Radiology at Brigham and Women’s Hospital, Harvard Medical School (NIH P41 RR013218, NIH R01 MH05074)", + "34_slide_title": "", + "34_slide_body": "", + "34_TextBox_0": "Slicer Scene", + "34_TextBox_1": "Slicer stores all loaded data in a repository called a scene\n\n\nEach data set, such as an image volume, surface model, or point set, is represented as a node in a Slicer scene.\n\n\nAll Slicer modules operate on the data stored in a Slicer scene.", + "35_LoadingaScene_title": "Loading a Scene", + "35_LoadingaScene_body": "", + "35_TextBox_0": "Slicer displays a 3D \nsurface model of the \nhead and 2D MRI slices", + "36_Viewing3Dmodels_title": "Viewing 3D models", + "36_Viewing3Dmodels_body": "", + "36_ArrowText_0": "Position the cursor over \nthe pin icon to reveal the \nslice menu and click on \nthe eye icon to display the \naxial slice in the 3D viewer", + "37_Viewing3Dmodels_title": "Viewing 3D models", + "37_Viewing3Dmodels_body": "", + "37_Rectangle_0": "", + "37_ArrowText_1": "Select the Models module \nin the list of models", + "38_Viewing3Dmodels_title": "Viewing 3D models", + "38_Viewing3Dmodels_body": "", + "38_ArrowText_0": "Slicer displays the list of \n3D models loaded in the \nscene\n\nSelect the model Skin.vtk", + "38_Rectangle_1": "", + "39_Viewing3Dmodels_title": "Viewing 3D models", + "39_Viewing3Dmodels_body": "", + "39_ArrowText_0": "Lower the opacity of \nthe Skin model using \nthe visibility slider", + "39_TextBox_1": "The skull bone and \neyeballs models appear \nthrough the skin", + "40_Viewing3Dmodels_title": "Viewing 3D models", + "40_Viewing3Dmodels_body": "", + "40_Rectangle_0": "", + "40_ArrowText_1": "Select the skull bone \nmodel and click on the \neye icon to turn off its \nvisibility", + "40_TextBox_2": "The white matter and \noptic nerve models \nappear through the skin", + "41_Interactingwith3Dmodels_title": "Interacting with 3D models", + "41_Interactingwith3Dmodels_body": "", + "41_ArrowText_0": "Click on the eye icon to \ndisplay the coronal slice \nin the 3D viewer", + "42_Interactingwith3Dmodels_title": "Interacting with 3D models", + "42_Interactingwith3Dmodels_body": "", + "42_Rectangle_0": "", + "42_Arrow_1": "", + "42_ArrowText_2": "Select the hemispheric \nwhite matter model and \nselect the option Clipping", + "43_Interactingwith3Dmodels_title": "Interacting with 3D models", + "43_Interactingwith3Dmodels_body": "", + "43_TextBox_0": "Move the coronal slice \nposteriorily to display the \noptic chiasm", + "44_Interactingwith3Dmodels_title": "Interacting with 3D models", + "44_Interactingwith3Dmodels_body": "", + "44_TextBox_0": "Slicer displays a 3D view of \nthe optic chiasm", + "45_slide_title": "", + "45_slide_body": "", + "45_TextBox_0": "Conclusion", + "45_TextBox_1": "• 3D Slicer provides advanced functionalities for loading and viewing 3D medical imaging data\n\n• The tutorial demonstrates how to use volume rendering and 3D surface modeling for interactive visualization of CT and MRI data\n\n\nContact: spujol@bwh.harvard.edu", + "46_slide_title": " ", + "46_slide_body": " ", + "46_TextBox_0": "Acknowledgements", + "46_TextBox_1": "Neuroimage Analysis Center (NIBIB P41 EB015902)" } \ No newline at end of file