This repository contains analysis code and resources for the manuscript "Structural connectivity of human inferior colliculus subdivisions using in vivo and post mortem diffusion MRI tractography" (link forthcoming).
- Tractography streamlines and other derivatives: https://osf.io/7e6qn/?view_only=a25d48e093aa4318914e395a2bea62d5
- 10-subject in vivo (brainstem processed/tractography): https://osf.io/hxekn/
- Sub-millimeter in vivo (raw/preprocessed): https://doi.org/10.5061/dryad.rjdfn2z8g
- Sub-millimeter in vivo (diffusion MRI modeling): http://brain.labsolver.org/diffusion-mri-data/mgh-760-m-dmri-data
- Post mortem (by request): https://civmvoxport.vm.duke.edu/voxbase/login.php?return_url=%2Fvoxbase%2F
- DSI Studio (Jan 7 2021 build)
- Python 3.9
- Jupyter
- numpy 1.20.1
- pandas 1.2.1
- seaborn 0.11.1
Analysis was performed on a MacBook Pro 16" (2019) with 32 GB RAM and a 2.3 GHz 8-core Intel Core i9 running macOS Big Sur (Version 11.5).