Merge pull request #13 from jaempawi/main #77

	name: Build & Deploy Hugo Site

	on:
	push:
	branches:
	- main
	workflow_dispatch: # Allow manual triggering

	permissions:
	contents: read
	pages: write
	id-token: write

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.10'

	- name: Setup Hugo
	uses: peaceiris/actions-hugo@v3
	with:
	hugo-version: 'latest'
	extended: true

	- name: Download Hugo Book theme
	run: \|
	mkdir -p website/themes
	cd website/themes
	git clone https://github.com/alex-shpak/hugo-book.git
	cd ../..

	- name: Generate xQTL Data Catalog
	run: \|
	python scripts/toc.py \
	content/xqtl-data/{gwas,omics,qtl,study_info,reference_data}/*.md \
	-o content/xqtl-data/README.md \
	-t "FunGen-xQTL Data Catalog" \
	-b "https://github.com/StatFunGen/xqtl-resources/tree/main/" \
	-c "Lead analysts: " \
	--subfolder-readme

	- name: Generate and Build Hugo Site
	run: \|
	python scripts/hugo_generator.py \
	--base-url https://statfungen.github.io/xqtl-resources/ \
	--no-readme \
	--no-theme-download \
	--build \
	--minify

	- name: Upload artifact for GitHub Pages
	uses: actions/upload-pages-artifact@v3
	with:
	path: ./website/public

	deploy:
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	runs-on: ubuntu-latest
	needs: build
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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