From bf9f2957cb08894bdb39d9f6eac09bb5d5fd4764 Mon Sep 17 00:00:00 2001 From: Dr Nathan Green Date: Fri, 19 Jun 2026 16:59:23 +0100 Subject: [PATCH 1/2] Fix MAIC covariate adjustment and shrink r-universe badge --- R/strategy_.R | 10 ++++++++++ README.md | 3 +-- docs/index.html | 11 ++++++----- 3 files changed, 17 insertions(+), 7 deletions(-) diff --git a/R/strategy_.R b/R/strategy_.R index 0b5b718..5e5ec6f 100644 --- a/R/strategy_.R +++ b/R/strategy_.R @@ -102,6 +102,16 @@ strategy_maic <- function(formula = NULL, } } } + # Ensure MAIC uses an unadjusted outcome model to prevent estimating conditional effects. + resp_var <- all.vars(outcome_model)[1] + out_vars <- all.vars(outcome_model) + + if (length(setdiff(out_vars, c(resp_var, trt_var))) > 0) { + if (verbatim) { + warning("Covariates detected in the MAIC outcome model. To ensure the estimation of compatible marginal treatment effects, MAIC requires an unadjusted outcome model. The outcome model is being automatically overridden to '", resp_var, " ~ ", trt_var, "'.", call. = FALSE) + } + outcome_model <- as.formula(paste(resp_var, "~", trt_var)) + } check_formula(outcome_model, trt_var) diff --git a/README.md b/README.md index 52edc0e..4c66977 100644 --- a/README.md +++ b/README.md @@ -10,8 +10,7 @@ [![R-CMD-check](https://github.com/StatisticsHealthEconomics/outstandR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/StatisticsHealthEconomics/outstandR/actions/workflows/R-CMD-check.yaml) [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0) -[![outstandR status -badge](https://statisticshealtheconomics.r-universe.dev/outstandR/badges/version)](https://statisticshealtheconomics.r-universe.dev/outstandR) +outstandR status badge [![CRAN status](https://www.r-pkg.org/badges/version/outstandR)](https://CRAN.R-project.org/package=outstandR) [![codecov](https://codecov.io/gh/StatisticsHealthEconomics/outstandR/graph/badge.svg?token=YOUR_CODECOV_TOKEN)](https://codecov.io/gh/StatisticsHealthEconomics/outstandR) diff --git a/docs/index.html b/docs/index.html index 8ea4b7b..a551065 100644 --- a/docs/index.html +++ b/docs/index.html @@ -12,8 +12,8 @@ - - + + @@ -95,7 +95,7 @@

Installation"https://cloud.r-project.org"))

Alternatively, you may wish to download directly from the repo with

-remotes::install_github("StatisticsHealthEconomics/outstandR")
+remotes::
install_github("StatisticsHealthEconomics/outstandR")

Background @@ -107,7 +107,7 @@

Background @@ -186,8 +186,9 @@

Dev status

  • R-CMD-check
  • License: GPL v3
  • -
  • outstandR status badge
  • +
  • outstandR status badge
  • CRAN status
  • +
  • codecov

From 4060efce54d7f483d4c37169282572352757bbb5 Mon Sep 17 00:00:00 2001 From: Dr Nathan Green Date: Fri, 19 Jun 2026 17:00:44 +0100 Subject: [PATCH 2/2] updated pkgdown site --- _pkgdown.yml | 23 +- badge.svg | 22 + docs/404.html | 4 +- docs/GEMINI.html | 2 +- docs/LICENSE.html | 2 +- docs/articles/Binary_outcome_example.html | 618 ++-------- docs/articles/Binary_outcome_example.md | 421 +------ docs/articles/Continuous_outcome_example.html | 321 +---- docs/articles/Continuous_outcome_example.md | 235 +--- docs/articles/Count_outcome_example.html | 310 +---- docs/articles/Count_outcome_example.md | 225 +--- docs/articles/adding-a-new-strategy.html | 4 +- docs/articles/index.html | 28 +- docs/articles/index.md | 17 +- docs/authors.html | 2 +- .../07d40e985ad7c747025dabb9f22142c4.woff2 | Bin 16388 -> 16456 bytes .../fonts/1Ptug8zYS_SKggPNyC0ITw.woff2 | Bin 48264 -> 48336 bytes .../fonts/1Ptug8zYS_SKggPNyCMIT5lu.woff2 | Bin 31480 -> 30860 bytes .../fonts/1Ptug8zYS_SKggPNyCkIT5lu.woff2 | 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+++++++++++++++++ vignettes/Continuous_outcome_example.Rmd | 372 ++++++ vignettes/Count_outcome_example.Rmd | 425 +++++++ 209 files changed, 3717 insertions(+), 2141 deletions(-) create mode 100644 badge.svg create mode 100644 docs/reference/calc_bucher_naive.html create mode 100644 docs/reference/calc_bucher_naive.md create mode 100644 vignettes/Binary_outcome_example.Rmd create mode 100644 vignettes/Binary_outcome_example.html create mode 100644 vignettes/Continuous_outcome_example.Rmd create mode 100644 vignettes/Count_outcome_example.Rmd diff --git a/_pkgdown.yml b/_pkgdown.yml index 4b6b2ff..7b4f1ac 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -83,14 +83,17 @@ reference: contents: - strategy-class -# articles: -# - title: "Binary outcome data example" -# contents: -# - "Binary_outcome_example" -# - title: "Continuous outcome data example" -# contents: -# - "Continuous_outcome_example" -# - title: "Count outcome data example" -# contents: -# - "Count_outcome_example" +articles: +- title: "Binary outcome data example" + contents: + - "Binary_outcome_example" +- title: "Continuous outcome data example" + contents: + - "Continuous_outcome_example" +- title: "Count outcome data example" + contents: + - "Count_outcome_example" +- title: "Developer Guides" + contents: + - "articles/adding-a-new-strategy" diff --git a/badge.svg b/badge.svg new file mode 100644 index 0000000..fe9d5de --- /dev/null +++ b/badge.svg @@ -0,0 +1,22 @@ + + + r-universe: 2.0.0 + + + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/404.html b/docs/404.html index 553eed2..90580a3 100644 --- a/docs/404.html +++ b/docs/404.html @@ -12,8 +12,8 @@ - - + + diff --git a/docs/GEMINI.html b/docs/GEMINI.html index 8dc14f5..d9bda19 100644 --- a/docs/GEMINI.html +++ b/docs/GEMINI.html @@ -1,5 +1,5 @@ -outstandR: Outcome Regression Standardisation • outstandR +outstandR: Outcome Regression Standardisation • outstandR Skip to contents diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 04cba1c..4056cb5 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -1,5 +1,5 @@ -GNU General Public License • outstandR +GNU General Public License • outstandR Skip to contents diff --git a/docs/articles/Binary_outcome_example.html b/docs/articles/Binary_outcome_example.html index 31a162a..bd888c3 100644 --- a/docs/articles/Binary_outcome_example.html +++ b/docs/articles/Binary_outcome_example.html @@ -1,11 +1,16 @@ - + Binary data example • outstandR + + + + + @@ -16,11 +21,11 @@ Skip to contents -