Not sure why but it indexed beyond the bounds of the atlas, maybe an orientation issue on demba_allen_seg_dev_mouse_p14_20um
❯ python makecutlas.py demba_allen_seg_dev_mouse_p14_20um
Loading atlas
Downloading... ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.0% • 565.7/565.7 MB • speed: 4.6 MB/s • ETA: 0:00:00
Shape: (705, 400, 570)
Building annotations
Building annotation image
Traceback (most recent call last):
File "/home/harryc/github/BrainGlobe-support/makecutlas.py", line 36, in <module>
v = remap[int(annotation[y, z, x])]
~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
KeyError: 495
╭─ ~/github/BrainGlobe-support on master ··································· took 2m 8s Py CCFT Node system at 18:07:08
╰─❯
Not sure why but it indexed beyond the bounds of the atlas, maybe an orientation issue on
demba_allen_seg_dev_mouse_p14_20um