Input as batch effect corrected expression matrix

[SharonWang]

I am wondering if there is a way to use batch effect corrected expression matrix as input rather than raw counts?

[paulyLin]

Hi Sharon,

Yes, there is a way. After creating an scData class object using scDataConstructor, you can overwrite the default normalised data attribute nData with anything you like; for instance you can replace it with the batch effect corrected expression matrix.

Hope that it helps.

Regards,
Paul

[SharonWang]

Dear Paul, Thank you very much for your help! It worked very well. best regards, Sharon

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________________________________ From: paulyLin <notifications@github.com> Sent: 19 April 2017 14:19 To: VCCRI/CIDR Cc: SharonWang; Author Subject: Re: [VCCRI/CIDR] Input as batch effect corrected expression matrix (#3) Hi Sharon, Yes, there is a way. After creating an scData class object using scDataConstructor, you can overwrite the default normalised data attribute nData with anything you like; for instance you can replace it with the batch effect corrected expression matrix. Hope that it helps. Regards, Paul — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#3 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ACF0OPuuTa9xHQJFGNMIx1upSkBYCI5Qks5rxcOtgaJpZM4NAbTs>.