re-enabled file size check when reading binary files #6
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ master, dev, "dev_JV" ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| # ------------------------------------------------------------ | |
| # 1) INSTALL-ONLY MATRIX | |
| # ------------------------------------------------------------ | |
| install: | |
| name: Install check (Python ${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip and build tools | |
| run: python -m pip install --upgrade pip setuptools wheel build | |
| - name: Install brukerapi (no tests) | |
| run: | | |
| git clone https://github.com/isi-nmr/brukerapi-python.git | |
| cd brukerapi-python | |
| pip install -e . --use-pep517 | |
| # ------------------------------------------------------------ | |
| # 2) FULL TEST JOB | |
| # ------------------------------------------------------------ | |
| test: | |
| name: Full tests (Python 3.13) | |
| runs-on: ubuntu-latest | |
| needs: install | |
| strategy: | |
| matrix: | |
| python-version: ["3.13"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip and build tools | |
| run: python -m pip install --upgrade pip setuptools wheel build | |
| - name: Install brukerapi with dev dependencies | |
| run: | | |
| git clone https://github.com/isi-nmr/brukerapi-python.git | |
| cd brukerapi-python | |
| pip install pytest zenodo_get pytest-cov | |
| pip install -e .[dev] --use-pep517 | |
| - name: Cache Zenodo data | |
| uses: actions/cache@v3 | |
| with: | |
| path: test/zenodo_zips | |
| key: zenodo-4522220 | |
| - name: Run all dataset tests | |
| run: | | |
| python -m pytest test -v --cov=brukerapi --cov-branch --cov-report=xml --cov-report=term-missing --cov-report=html | |
| - name: Upload coverage HTML | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: htmlcov/ | |
| - name: Print total coverage | |
| run: | | |
| echo "Total coverage:" | |
| python - <<EOF | |
| import xml.etree.ElementTree as ET | |
| tree = ET.parse('coverage.xml') | |
| root = tree.getroot() | |
| line_rate = float(root.attrib['line-rate']) * 100 | |
| print(f"{line_rate:.2f}%") | |
| EOF |