[DO NOT MERGE — experimental] feat(ndi-python): Phase A integration#112

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feat/ndi-python-phase-a

Commits on May 13, 2026

feat(ndi-python): Phase A — install NDI-python + wire VHSB/compression/ontology

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Commits on May 14, 2026

feat(tabular_query): violin-chart endpoint + NDI-python SHA pinning + strict-boot

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fix(tabular_query): prefer numeric column when multiple match

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feat(tabular_query): substring-match groupBy too (LLM ergonomics)

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feat(backend): labchat wave — image, distinct_summary, Sprint 1.5 binding

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feat(tabular_query): per-group docIds for granular sample-row citations

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chore: remove inadvertent Finder dupe file_format 2.py

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fix(ontology): bypass stale stubs so NDI-python fallback fires across data browser

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fix(backend): aggregated audit findings — ontology resolution + tabular_query error envelope

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fix(csrf): exempt /api/ontology/batch-lookup so anonymous popovers resolve

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fix(ontology): WBStrain scrape fallback + Caenorhabditis facet dedup

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fix(chat): probe→element class alias + typed binding-failure codes

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feat(timeline): port treatment-timeline orchestration to Railway/Python

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feat(spike-summary): Python port of fetch_spike_summary orchestration

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feat(psth): peri-stimulus time histogram service + router

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Commits on May 15, 2026

fix(auth): scope CSRF/session cookie Domain to *.ndi-cloud.com hosts

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chore(tests): scrub multiplication-sign from cookie_attrs test comments

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fix(summary): widen epoch-count fallback chain to phase-A ingest classes

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fix(security+observability): Stream 1 quick wins — session-id log truncation + CVE bumps + ruff fix

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test(compliance): Stream 2.1 — static regression test asserting no PHI/secrets in log calls

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docs: Stream 4.8 — backend service-dependency README

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fix(observability+test-isolation): Stream 5.5 sessions diagnostic + 6.6 pretest isolation

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feat(treatment-timeline): Stream 5.2 — treatment_drug class + administration_*_time fallback

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feat: backend pieces — S3.4 enable_ask + S5.1 fuzzier substring + S5.6 species diagnostic

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feat(tables): Stream 5.8 — server-side pagination on /tables/{class}

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feat(aggregate-documents): Stream 4.9 — port aggregation to Railway (ADR-001)

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Commits on May 18, 2026

feat(class-aliases): F-1c + F-1d + F-1e — surface legacy class data

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feat: F-2 + F-3 — subject filter on tables + direction filter on dependencies

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feat(stimulus): F-1 — /tables/stimulus projection for StimuliPicker

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feat(tabular-query): F-8 — add POST variant alongside GET

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fix(projection): use REQUESTED class for _project_for_class dispatch

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fix(treatment): F-1e complete — projection + row builder for treatment_drug + treatment_transfer

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feat(tables): expose treatment_drug + treatment_transfer via /tables route

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fix(cache): bump table schema v4 → v5 to invalidate F-1d/F-1e blobs

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test(cache): update tests for v5 schema bump

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feat(F-1b): broadcast treatments onto subject summary table

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fix(F-1b): extend subject enrichment with treatment_drug + treatment_transfer

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fix(signal): smart default file pick — skip channel_list.bin

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fix(documents): apply class-alias chain in /documents listing (B2)

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fix(treatment-timeline): parse MATLAB datestr in stringValue (B3)

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fix(binary): smart default file pick on image decode paths (B5 sweep)

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fix(B6): filter parent/aggregate session docs from counts.sessions

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fix(B6): bump SUMMARY_KEY_PREFIX v1 → v2 to invalidate stale entries

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fix(B6): add session.reference prefix-suffix fallback for non-graph datasets

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chore(B6): bump SUMMARY_KEY_PREFIX v2 → v3 for prefix-fallback rollout

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chore(B6): add diagnostic log + bump cache v3 → v4 for fresh build

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chore(B6): surface filter diagnostic via warnings + bump cache v4 → v5

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chore(B6): move diagnostic upstream of depends_on early-exit + v6 cache

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fix(B6): always prefer prefix-suffix when it filters; remove debug + v7 cache

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fix(F-1c): counts.probes aliases to elements when literal probe is 0

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perf(F-7): aggregate_documents hydrates slim ndiquery refs via bulk_fetch

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test(F-8): pin tabular_query GET == POST shape + validation parity

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Commits on May 19, 2026

feat(S5.3): cross_table_pairs service + POST /cross-table-query route

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test(F-1): apply preserved integration-test stub with respx fix

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