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allele1 and allele2, which one is effective allele? #14

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allele1 and allele2, which one is effective allele?#14
@jeffchen2000

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@jeffchen2000
jeffchen2000
opened on Dec 1, 2025

Hi Wenjian
in the SPAcox output, there are columns allele1 and allele2, how they are defined? the most I want to know is which one is effective allele (like A1 in plink2 output)?
thanks
Xianfeng Chen

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