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Option to process *only* files given with -includeFile #25

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@WKleinschmit

-ext doesn't support the extension '*' and listing all possible extensions is tedious and error-prone.
-regExExclude excludes even files given explicitly with -includeFile.

At least the latter should be changed so that files given explicitly on the command line (with -if) are always included, no matter what.

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