Errors when running cdhit.sh

[HinamonAmu]

Hello, I have successfully installed cd-hit tool, but when I run cdhit.sh, the terminal will prompt the following errors:

.../DISAE-master/cdhit.sh: 行 33: psi-cd-hit.pl：未找到命令
.../DISAE-master/cdhit.sh: 行 37: clstr_rev.pl：未找到命令
.../DISAE-master/cdhit.sh: 行 42: clstr_rev.pl：未找到命令

which means that I don't have the above psi-cd-hit.pl clstr_rev.pl (but I can find them in the installation package of cd-hit)
Do you know how to solve it? Thanks and best regards.

[thomasly]

Hi, The cd-hit package itself does not add psi-cd-hit.pl or clstr_rev.pl to PATH automatically. You can download their source code here: weizhongli/cdhit: Automatically exported from code.google.com/p/cdhit (github.com) <https://github.com/weizhongli/cdhit> and add the paths to those two files to PATH manually. Best, Yang

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On Thu, Dec 23, 2021 at 4:20 AM HinamonAmu ***@***.***> wrote: Hello, I have successfully installed *cd-hit* tool, but when I run *cdhit.sh*, the terminal will prompt the following errors: .../DISAE-master/cdhit.sh: 行 33: psi-cd-hit.pl：未找到命令 .../DISAE-master/cdhit.sh: 行 37: clstr_rev.pl：未找到命令 .../DISAE-master/cdhit.sh: 行 42: clstr_rev.pl：未找到命令 which means that I don't have the above *psi-cd-hit.pl <http://psi-cd-hit.pl> clstr_rev.pl <http://clstr_rev.pl>* (but I can find them in the installation package of cd-hit) Do you know how to solve it? Thanks and best regards. — Reply to this email directly, view it on GitHub <#8>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACREFGTYY46FL3UQTZ34KCTUSLSWJANCNFSM5KULENVA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>