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fix_batch_corrections #5

@byee4

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@byee4
          Just taking some notes here

I found strong batch effect in polyA. I am thinking of the following plan:

  1. salmon parameters: --seqBias --gcBias --posBias. The documentation also suggest checking GC bias from multiQC distributions https://salmon.readthedocs.io/en/latest/salmon.html
  2. combat salmon quant.sf prior to running the next step of labrat.

Originally posted by @algaebrown in #4 (comment)

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