diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index f1c7625..cfbfe82 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -18,7 +18,7 @@ jobs: - name: Install Mamba run: | - conda install -c conda-forge mamba=1.5.12 -y + conda install -c conda-forge mamba=1.5.12 python=3.10 -y - name: Print conda folder contents run: | diff --git a/marine_environment3.yaml b/marine_environment3.yaml new file mode 100644 index 0000000..bc2b72a --- /dev/null +++ b/marine_environment3.yaml @@ -0,0 +1,281 @@ +name: marine_environment +channels: + - anaconda + - bioconda + - r + - defaults + - conda-forge +dependencies: + - _libgcc_mutex=0.1 + - _openmp_mutex=4.5 + - abseil-cpp=20211102.0 + - anndata=0.9.2 + - anyio=3.5.0 + - argon2-cffi=21.3.0 + - argon2-cffi-bindings=21.2.0 + - arpack=3.8.0 + - arrow-cpp=11.0.0 + - asttokens=2.0.5 + - async-lru=2.0.4 + - attrs=23.1.0 + - aws-c-common=0.6.8 + - aws-c-event-stream=0.1.6 + - aws-checksums=0.1.11 + - aws-sdk-cpp=1.8.185 + - babel=2.11.0 + - backcall=0.2.0 + - backports=1.0 + - backports.zoneinfo=0.2.1 + - beautifulsoup4=4.12.2 + - bedtools=2.31.1 + - blas=1.0=mkl + - bleach=4.1.0 + - boost-cpp=1.84.0 + - bottleneck=1.3.5 + - brotli=1.0.9 + - brotli-python=1.0.9 + - bzip2=1.0.8 + - c-ares=1.21.0 + - ca-certificates=2024.2.2 + - cached-property=1.5.2 + - cached_property=1.5.2 + - certifi=2024.2.2 + - cffi=1.15.1 + - charset-normalizer=2.0.4 + - colorama=0.4.6 + - comm=0.1.2 + - contourpy=1.0.5 + - cryptography=41.0.3 + - cycler=0.11.0 + - cyrus-sasl=2.1.28 + - dbus=1.13.18 + - debugpy=1.6.7 + - decorator=5.1.1 + - defusedxml=0.7.1 + - executing=0.8.3 + - expat=2.5.0 + - fontconfig=2.14.2 + - fonttools=4.25.0 + - freetype=2.12.1 + - get-annotations=0.1.2 + - gflags=2.2.2 + - giflib=5.2.1 + - glib=2.69.1 + - glog=0.5.0 + - glpk=5.0 + - gmp=6.3.0 + - grpc-cpp=1.48.2 + - gst-plugins-base=1.14.1 + - gstreamer=1.14.1 + - h5py=3.8.0 + - hdf5=1.12.2 + - icu=73.2 + - idna=3.4 + - igraph=0.10.8 + - importlib-metadata=6.0.0 + - importlib_metadata=6.0.0 + - importlib_resources=6.1.1 + - intel-openmp=2023.1.0 + - ipykernel=6.26.0 + - ipython=8.12.2 + - ipywidgets=8.0.4 + - jedi=0.18.1 + - jinja2=3.1.2 + - joblib=1.3.2 + - jpeg=9e + - json5=0.9.6 + - jsonschema=4.19.2 + - jsonschema-specifications=2023.7.1 + - jupyter=1.0.0 + - jupyter-lsp=2.2.0 + - jupyter_client=8.1.0 + - jupyter_console=6.6.3 + - jupyter_core=5.3.0 + - jupyter_events=0.8.0 + - jupyter_server=2.10.0 + - jupyter_server_terminals=0.4.4 + - jupyterlab=4.0.8 + - jupyterlab_pygments=0.1.2 + - jupyterlab_server=2.25.1 + - jupyterlab_widgets=3.0.9 + - kiwisolver=1.4.4 + - krb5=1.20.1 + - lcms2=2.12 + - ld_impl_linux-64=2.40 + - leidenalg=0.10.2 + - libaec=1.1.2 + - libblas=3.9.0 + - libboost=1.84.0 + - libboost-devel=1.84.0 + - libboost-headers=1.84.0 + - libbrotlicommon=1.0.9 + - libbrotlidec=1.0.9 + - libbrotlienc=1.0.9 + - libclang=14.0.6 + - libclang13=14.0.6 + - libcups=2.4.2 + - libcurl=8.4.0 + - libdeflate=1.18 + - libedit=3.1.20221030 + - libev=4.33 + - libevent=2.1.10 + - libffi=3.4.2 + - libgcc-ng=13.2.0 + - libgfortran-ng=11.2.0 + - libgfortran5=11.2.0 + - libgomp=13.2.0 + - libiconv=1.17 + - liblapack=3.9.0 + - libleidenalg=0.11.1 + - libllvm14=14.0.6 + - libnghttp2=1.57.0 + - libnsl=2.0.1 + - libpng=1.6.39 + - libpq=12.15 + - libprotobuf=3.20.3 + - libsodium=1.0.18 + - libsqlite=3.44.0 + - libssh2=1.11.0 + - libstdcxx-ng=13.2.0 + - libthrift=0.15.0 + - libtiff=4.2.0 + - libuuid=2.38.1 + - libwebp=1.3.2 + - libwebp-base=1.3.2 + - libxcb=1.15 + - libxkbcommon=1.6.0 + - libxml2=2.12.4 + - libzlib=1.2.13 + - llvmlite=0.41.1 + - lz4-c=1.9.4 + - markupsafe=2.1.3 + - matplotlib=3.7.2 + - matplotlib-base=3.7.2 + - matplotlib-inline=0.1.6 + - mistune=2.0.4 + - mkl=2023.1.0 + - mkl-service=2.4.0 + - mkl_fft=1.3.8 + - mkl_random=1.2.4 + - munkres=1.1.4 + - mysql=5.7.24 + - natsort=8.4.0 + - nbclient=0.8.0 + - nbconvert=7.10.0 + - nbformat=5.9.2 + - ncurses=6.4 + - nest-asyncio=1.5.6 + - networkx=3.1 + - notebook=7.0.6 + - notebook-shim=0.2.3 + - numba=0.58.1 + - numexpr=2.8.4 + - numpy=1.24.3 + - numpy-base=1.24.3 + - openjpeg=2.4.0 + - openssl=3.2.1 + - orc=1.7.4 + - overrides=7.4.0 + - packaging=23.1 + - pandas=2.0.3 + - pandocfilters=1.5.0 + - parso=0.8.3 + - patsy=0.5.6 + - pcre=8.45 + - pexpect=4.8.0 + - pickleshare=0.7.5 + - pillow=10.0.1 + - pip=23.3.1 + - pkgutil-resolve-name=1.3.10 + - platformdirs=3.10.0 + - ply=3.11 + - polars=0.19.12 + - pooch=1.7.0 + - prometheus_client=0.14.1 + - prompt-toolkit=3.0.36 + - prompt_toolkit=3.0.36 + - psutil=5.9.0 + - ptyprocess=0.7.0 + - pure_eval=0.2.2 + - pyarrow=11.0.0 + - pybedtools=0.9.1 + - pycparser=2.21 + - pygments=2.15.1 + - pynndescent=0.5.11 + - pyopenssl=23.2.0 + - pyparsing=3.0.9 + - pyqt=5.15.10 + - pyqt5-sip=12.13.0 + - pysam=0.22.0 + - pysocks=1.7.1 + - python=3.8.18 + - python-dateutil=2.8.2 + - python-fastjsonschema=2.16.2 + - python-igraph=0.11.3 + - python-json-logger=2.0.7 + - python-tzdata=2023.3 + - python_abi=3.8 + - pytz + - pyyaml=6.0.1 + - pyzmq=25.1.0 + - qt-main=5.15.2 + - qtconsole=5.5.0 + - qtpy=2.4.1 + - re2=2022.04.01 + - readline=8.2 + - referencing=0.30.2 + - requests=2.31.0 + - rfc3339-validator=0.1.4 + - rfc3986-validator=0.1.1 + - rpds-py=0.10.6 + - samtools + - scanpy=1.9.6 + - scikit-learn=1.3.2 + - scipy=1.10.1 + - seaborn=0.13.1 + - seaborn-base=0.13.1 + - send2trash=1.8.2 + - session-info=1.0.0 + - setuptools=68.2.2 + - sip=6.7.12 + - six=1.16.0 + - snappy=1.1.9 + - sniffio=1.2.0 + - soupsieve=2.5 + - sqlite=3.41.2 + - stack_data=0.2.0 + - statsmodels=0.14.1 + - stdlib-list=0.10.0 + - tbb=2021.8.0 + - terminado=0.17.1 + - texttable=1.7.0 + - threadpoolctl=3.2.0 + - tinycss2=1.2.1 + - tk=8.6.13 + - tomli=2.0.1 + - tornado=6.3.3 + - tqdm=4.66.1 + - traitlets=5.7.1 + - typing-extensions=4.7.1 + - typing_extensions=4.7.1 + - tzdata=2023c + - umap-learn=0.5.5 + - urllib3=1.26.18 + - utf8proc=2.6.1 + - wcwidth=0.2.5 + - webencodings=0.5.1 + - websocket-client=0.58.0 + - wheel=0.41.3 + - widgetsnbextension=4.0.5 + - xkeyboard-config=2.40 + - xorg-kbproto=1.0.7 + - xorg-libx11=1.8.7 + - xorg-libxau=1.0.11 + - xorg-xextproto=7.3.0 + - xorg-xproto=7.0.31 + - xz=5.2.6 + - yaml=0.2.5 + - zeromq=4.3.4 + - zipp=3.11.0 + - zlib=1.2.13 + - zstd=1.5.5