From 0dd585e45a3c2ec0c2777d6aaeaa28ae16b2434d Mon Sep 17 00:00:00 2001 From: Shuhao Xu Date: Fri, 14 Nov 2025 12:48:14 -0800 Subject: [PATCH] fix bedgraph strand bug --- src/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/utils.py b/src/utils.py index 85616ae..0115b6e 100644 --- a/src/utils.py +++ b/src/utils.py @@ -128,7 +128,7 @@ def generate_bedgraphs(final_site_level_information_df, conversions_list, output pretty_print("Making bedgraphs for {} conversions...\n".format(conversions_list)) for conversion in conversions_list: conversion_search = conversion[0] + '>' + conversion[1] - sites_for_conversion = final_site_level_information_df[final_site_level_information_df.conversion == conversion_search] + sites_for_conversion = final_site_level_information_df[final_site_level_information_df.strand_conversion == conversion_search] sites_for_conversion['edit_fraction'] = sites_for_conversion['count']/sites_for_conversion['coverage'] sites_for_conversion['start'] = sites_for_conversion['position'] - 1 sites_for_conversion_bedgraph_cols = sites_for_conversion[['contig', 'start', 'position', 'edit_fraction']]