Skip to content

error with the save of finetne Model  #5

Description

@chenruipu
        if args.local_rank == 0 or epoch == init_epochs+1 or epoch == init_epochs + args.epochs:
            metrics_val, loss_val, _ = eval_step(val_dataloader, model, epoch)
            loss_val_list.append(loss_val)
            if args.epochs >= args.patience:
                if metrics_val[2] > r2_best: 
                    path_saver = f'/scratch/users/yanyichu/UTR-LM/Cao/saved_models/{filename}_fold{i}_epoch{epoch}.pt'
                    r2_best, ep_best = metrics_val[2], epoch
                    
                    
                    torch.save(model.eval().state_dict(), path_saver) # 
                    print(f'****Saving model in {path_saver}: Best epoch = {ep_best} | Train Loss = {loss_train:.4f} |  Val Loss = {loss_val:.4f} | SpearmanR_best = {r2_best:.4f}')
                    model_best = deepcopy(model)
                    

with this code, I could only save the fixed epoch models, unless using the parameter --local_rank which is not show in the finetune TE command:
cd ./Scripts/UTRLM_downstream CUDA_VISIBLE_DEVICES=0 python3 -m torch.distributed.launch --nproc_per_node=1 --master_port 9001 MJ4_Finetune_extract_append_predictor_CellLine_10fold-lr-huber-DDP.py --device_ids 0 --cell_line Muscle --label_type te_log --seq_type utr --inp_len 100 --huber_loss --modelfile ./Model/ESM2SI_3.1_fiveSpeciesCao_6layers_16heads_128embedsize_4096batchToks_MLMLossMin.pkl --finetune --bos_emb --lr 1e-2 --dropout3 0.2 --epochs 300 --prefix TE_ESM2SI_3.1.1e-2.M.dropout2
or changing the code to fit customized needs. I think it should be changed officially.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions