feat: complete Hydra wiring — 68 crates, middleware chain, mathematical frameworks, TUI, genome, daemon

Full system commit — clean history, no legacy artifacts.

Hydra: 68 crates, 82,000+ lines of Rust, 184 genome entries across 24 skills.
Three concurrent loops (Active, Ambient, Dream). Seven constitutional laws.
Self-writing genome. Always-on daemon. IDF-scored memory retrieval.
Bayesian confidence. Uncertainty trees. Surprise detection. Recursive introspection.
TUI cockpit. Federation daemon. Integration and action drop folders.
Capabilities catalogue (23 documents). Skill registry across 24 domains.

68/68 crates pass all tests. Zero clippy warnings. V1 harness 47/47 (100%).

Author: omoshola-o

.github/workflows/agentra-cli-ci.yml

@@ -0,0 +1,39 @@
+name: Agentra CLI CI
+
+on:
+  push:
+    paths:
+      - "Cargo.toml"
+      - "Cargo.lock"
+      - "agentra-cli/**"
+      - ".github/workflows/agentra-cli-ci.yml"
+  pull_request:
+    paths:
+      - "Cargo.toml"
+      - "Cargo.lock"
+      - "agentra-cli/**"
+      - ".github/workflows/agentra-cli-ci.yml"
+
+jobs:
+  test-agentra-cli:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - name: Cargo check
+        run: cargo check -p agentra-cli
+      - name: Cargo test
+        run: cargo test -p agentra-cli
+      - name: Installer syntax guardrails
+        run: |
+          for file in \
+            agentic-memory/scripts/install.sh \
+            agentic-codebase/scripts/install.sh \
+            agentic-vision/scripts/install.sh \
+            agentic-identity/scripts/install.sh; do
+            if [ -f "$file" ]; then
+              bash -n "$file"
+            else
+              echo "Skipping missing file in this repo checkout: $file"
+            fi
+          done

.github/workflows/canonical-consistency.yml

@@ -0,0 +1,68 @@
+name: Canonical Consistency
+
+on:
+  push:
+    branches: [main]
+    paths:
+      - "scripts/check-canonical-consistency.sh"
+      - "scripts/check-operational-depth-parity.sh"
+      - "scripts/check-command-surface.sh"
+      - "scripts/check-mcp-consolidation.sh"
+      - "scripts/lib/**"
+      - "README.md"
+      - "docs/**"
+      - "docs/mcp-consolidation-contract.json"
+      - "agentic-memory/**"
+      - "agentic-vision/**"
+      - "agentic-codebase/**"
+      - "agentic-identity/**"
+      - "agentic-time/**"
+      - "agentic-contract/**"
+      - "agentic-comm/**"
+      - "agentic-planning/**"
+      - "agentic-cognition/**"
+      - "agentic-reality/**"
+      - "agentralabs-tech-web/**"
+      - ".github/workflows/canonical-consistency.yml"
+  pull_request:
+    branches: [main]
+    paths:
+      - "scripts/check-canonical-consistency.sh"
+      - "scripts/check-operational-depth-parity.sh"
+      - "scripts/check-command-surface.sh"
+      - "scripts/check-mcp-consolidation.sh"
+      - "scripts/lib/**"
+      - "README.md"
+      - "docs/**"
+      - "docs/mcp-consolidation-contract.json"
+      - "agentic-memory/**"
+      - "agentic-vision/**"
+      - "agentic-codebase/**"
+      - "agentic-identity/**"
+      - "agentic-time/**"
+      - "agentic-contract/**"
+      - "agentic-comm/**"
+      - "agentic-planning/**"
+      - "agentic-cognition/**"
+      - "agentic-reality/**"
+      - "agentralabs-tech-web/**"
+      - ".github/workflows/canonical-consistency.yml"
+
+jobs:
+  check-canonical-consistency:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Checkout sister repos (from registry)
+        run: |
+          for repo in $(jq -r '.sisters[].repo' docs/sisters-registry.json); do
+            git clone --depth 1 "https://github.com/agentralabs/${repo}.git" "${repo}"
+          done
+
+      - name: Checkout web repo
+        run: git clone --depth 1 https://github.com/agentralabs/agentralab-tech-web.git agentralabs-tech-web
+        continue-on-error: true
+
+      - name: Run cross-sister canonical consistency checks
+        run: ./scripts/check-canonical-consistency.sh

.gitignore

@@ -0,0 +1,32 @@
+.DS_Store
+.claude/
+export
+output.txt
+target/
+agentra-config.json
+
+# Internal planning documents
+PYPI-BACKFILL-VISION-CODEBASE.md
+SISTER-VISION-20-YEAR.md
+
+# Internal docs — local-only, read by Claude Code and guardrails
+CLAUDE.md
+goals/
+
+# SDK crate — local-only, updated as needed, will publish to crates.io later
+agentic-sdk/
+
+# Nested repos managed independently
+.github-org-profile/
+agentic-codebase/
+agentic-cognition/
+agentic-comm/
+agentic-contract/
+agentic-identity/
+agentic-memory/
+agentic-planning/
+agentic-vision/
+agentralabs-tech-web/
+
+# Never commit node_modules
+**/node_modules/