diff --git a/.github/workflows/quality-gate.yml b/.github/workflows/quality-gate.yml
index 13a9d99..e7e105b 100644
--- a/.github/workflows/quality-gate.yml
+++ b/.github/workflows/quality-gate.yml
@@ -164,7 +164,7 @@ jobs:
   feature-flag-check:
     name: feature-flag-check
     needs: detect
-    if: ${{ needs.detect.outputs.heavy == 'true' }}
+    if: ${{ needs.detect.outputs.heavy == 'true' && needs.detect.outputs.native_required != 'true' }}
     uses: ./.github/workflows/feature-flag-check.yml
     with:
       runs-on: ${{ inputs.linux-runs-on }}
@@ -283,6 +283,6 @@ jobs:
              "rust-ci": ${{ needs.detect.outputs.rust == 'true' && needs.detect.outputs.heavy == 'true' }},
             "swift-ci": ${{ needs.detect.outputs.swift == 'true' && needs.detect.outputs.heavy == 'true' && needs.detect.outputs.native_required != 'true' && !github.event.repository.private }},
             "secret-scan": ${{ needs.detect.outputs.native_required != 'true' }},
-             "feature-flag-check": ${{ needs.detect.outputs.heavy == 'true' }},
+             "feature-flag-check": ${{ needs.detect.outputs.heavy == 'true' && needs.detect.outputs.native_required != 'true' }},
              "repository-gates": ${{ needs.detect.outputs.required_contexts != '[]' }}}
         run: node .quality-gate-source/.github/scripts/evaluate_quality_gate.mjs
diff --git a/tests/test_workflow_wiring.py b/tests/test_workflow_wiring.py
index 72fe5cc..990d5b3 100644
--- a/tests/test_workflow_wiring.py
+++ b/tests/test_workflow_wiring.py
@@ -86,6 +86,13 @@ def test_native_gate_repositories_do_not_run_duplicate_language_or_secret_gates(
         self.assertIn("native_required: ${{ steps.native.outputs.required_contexts != '[]' }}", source)
         self.assertGreaterEqual(source.count("needs.detect.outputs.native_required != 'true'"), 6)
 
+    def test_native_gate_repositories_do_not_run_duplicate_feature_flag_gate(self) -> None:
+        source = QUALITY_GATE.read_text()
+        self.assertIn(
+            "needs.detect.outputs.heavy == 'true' && needs.detect.outputs.native_required != 'true'",
+            source,
+        )
+
     def test_secret_scan_is_required_only_when_selected(self) -> None:
         evaluator = (ROOT / ".github/scripts/evaluate_quality_gate.mjs").read_text()
         self.assertIn("const required = new Set();", evaluator)