diff --git a/SLURM/scripts/juicer.sh b/SLURM/scripts/juicer.sh
index 7e8acd4..6a0f017 100755
--- a/SLURM/scripts/juicer.sh
+++ b/SLURM/scripts/juicer.sh
@@ -587,7 +587,7 @@ else
 fi
 jid=`sbatch <<- HEADER | egrep -o -e "\b[0-9]+$"
 	#!/bin/bash -l 
-        $userstring
+	$userstring
 	$queuestring
 	#SBATCH -t 2
 	#SBATCH -c 1
@@ -669,7 +669,7 @@ then
 			#SBATCH -o $debugdir/split-%j.out
 			#SBATCH -e $debugdir/split-%j.err
 			#SBATCH -J "${groupname}_split_${i}"
-                        $userstring			
+			$userstring			
 			date
 			echo "Split file: $filename"
 			split -a 3 -l $splitsize -d --additional-suffix=.fastq $i $splitdir/$filename
@@ -685,7 +685,7 @@ SPLITEND`
 			#SBATCH -o $debugdir/split-%j.out
 			#SBATCH -e $debugdir/split-%j.err
 			#SBATCH -J "${groupname}_split_${i}"
-                        $userstring			
+			$userstring			
 			date
 			echo "Split file: $filename"
 			zcat $i | split -a 3 -l $splitsize -d --additional-suffix=.fastq - $splitdir/$filename
@@ -769,7 +769,7 @@ SPLITEND`
 		#SBATCH -e $debugdir/count_ligation-%j.err
 		#SBATCH -J "${groupname}_${jname}_Count_Ligation"
 		#SBATCH --mem=5G
-                $userstring			
+		$userstring			
 
 		date
 		export usegzip=${usegzip}; export name=${name}; export name1=${name1}; export name2=${name2}; export ext=${ext}; export ligation=${ligation}; export singleend=${singleend}; ${juiceDir}/scripts/countligations.sh
@@ -790,7 +790,7 @@ CNTLIG`
 		#SBATCH --mem=$alloc_mem
 		#SBATCH -J "${groupname}_align1_${jname}"
 		#SBATCH --threads-per-core=1		
-                $userstring			
+		$userstring			
 
 		${load_bwa}
 		# Align reads
@@ -847,7 +847,7 @@ ALGNR1`
 		#SBATCH --mem=5G
 		${load_awk}
 		${load_samtools}
-                $userstring			
+		$userstring			
 
 		date
 		echo -ne "0 " > ${name}${ext}_norm.txt.res.txt
@@ -873,7 +873,7 @@ CNTLINE`
 		#SBATCH -d $dependalign
 		#SBATCH -J "${groupname}_merge_${jname}"
                 #SBATCH --threads-per-core=1
-                $userstring
+				$userstring
 		${load_awk}
 
 		date
@@ -901,7 +901,7 @@ MRGALL`
 		#SBATCH -d $dependalign
 		#SBATCH -J "${groupname}_merge_${jname}"
                 #SBATCH --threads-per-core=1
-                $userstring
+				$userstring
 		${load_awk}
 		#time awk -v maxcount=1000000 -f $juiceDir/scripts/calculate_insert_size.awk $name$ext.sam > $name$ext.insert_size
 		#will need to combine chimeric_sam and adjust_insert_size 
@@ -921,7 +921,7 @@ MRGALL1`
 		#SBATCH -d $dependalign
 		#SBATCH -J "${groupname}_merge_${jname}"
                 #SBATCH --threads-per-core=1
-                $userstring
+				$userstring
 		${load_awk}
 		#time awk -v maxcount=1000000 -f $juiceDir/scripts/calculate_insert_size.awk $name$ext.sam > $name$ext.insert_size
 		#will need to combine chimeric_sam and adjust_insert_size 
@@ -940,7 +940,7 @@ MRGALL1`
 		#SBATCH -d $dependalign
 		#SBATCH -J "${groupname}_merge_${jname}"
                 #SBATCH --threads-per-core=1
-                $userstring
+				$userstring
 		${load_awk}
 
 		time awk -v avgInsertFile=${name}${ext}_norm.txt.res.txt -f $juiceDir/scripts/adjust_insert_size.awk $name$ext.sam2 > $name$ext.sam3
@@ -997,7 +997,7 @@ MRGALL2`
 		#SBATCH -p $queue
 		#SBATCH -J "${groupname}_check"
 		#SBATCH -d $dependmerge
-                $userstring			
+				$userstring			
 
 		date
 		echo "Checking $f"
@@ -1050,7 +1050,7 @@ then
 		${sbatch_cpu_alloc}
 		#SBATCH -J "${groupname}_fragmerge"
 		${sbatch_wait}
-                $userstring			
+				$userstring			
 
 		date
 		if [ -f "${errorfile}" ]
@@ -1102,7 +1102,7 @@ then
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_dedup_guard"
 	${sbatch_wait}
-        $userstring			
+	$userstring			
 
 	date
 DEDUPGUARD`
@@ -1121,7 +1121,7 @@ DEDUPGUARD`
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_dedup"
 	${sbatch_wait}
-        $userstring
+	$userstring
 	
 	${load_awk}
 	date
@@ -1158,7 +1158,7 @@ DEDUP`
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_post_dedup"
 	#SBATCH -d ${dependguard}
-        $userstring			
+	$userstring			
 
 	date
 	rm -Rf $tmpdir;
@@ -1195,7 +1195,7 @@ if [ -z $postproc ] && [ -z $final ]
 	#SBATCH --mem-per-cpu=8G
 	#SBATCH -J "${groupname}_dupcheck"
 	${sbatch_wait}
-        $userstring			
+	$userstring			
 	${load_awk}
 	date 
 	wc -l ${outputdir}/merged_sort.sam |  awk '{printf("%s ", \\\$1)}' > $debugdir/dupcheck-${groupname}
@@ -1346,7 +1346,7 @@ METH`
 	#SBATCH --mem=25G
 	#SBATCH -J "${groupname}_stats"
 	${sbatch_wait000}
-        $userstring			
+	$userstring			
 
 	date
 	if [ -f "${errorfile}" ]
@@ -1416,7 +1416,7 @@ then
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_mnd"     
 	${sbatch_wait1}
-        $userstring	   
+	$userstring	   
 	${load_samtools}
 	date
 
@@ -1438,7 +1438,7 @@ MND`
 	#SBATCH -J "${groupname}_prep_done"     
         #SBATCH --mail-type=END,FAIL
 	${sbatch_wait1}
-        $userstring	   
+	$userstring	   
 	date
 	export splitdir=${splitdir}; export outputdir=${outputdir}; export early=1; 
 	if ${juiceDir}/scripts/check.sh 
@@ -1478,7 +1478,7 @@ FINCLN1`
 	#SBATCH --mem=150G
 	#SBATCH -J "${groupname}_hic"
 	${sbatch_waitstats}
-        $userstring			
+	$userstring			
 
 	${load_java}
 	export IBM_JAVA_OPTIONS="-Xmx150000m -Xgcthreads1"
@@ -1516,7 +1516,7 @@ HIC`
 	#SBATCH --mem=150G
 	#SBATCH -J "${groupname}_hic30"
 	${sbatch_waitstats30}
-        $userstring	
+	$userstring	
 
 	${load_java}
 	export IBM_JAVA_OPTIONS="-Xmx150000m -Xgcthreads1"
@@ -1565,7 +1565,7 @@ then
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_hiccups_wrap"
 	${sbatch_wait}
-        $userstring
+	$userstring
 
 	${load_gpu}
 	echo "load: $load_gpu"
@@ -1598,7 +1598,7 @@ then
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_arrowhead_wrap"
 	${sbatch_wait}
-        $userstring			
+	$userstring			
 
 	${load_java}
 	date
@@ -1648,7 +1648,7 @@ jid=`sbatch <<- FINCLN1 | egrep -o -e "\b[0-9]+$"
 	#SBATCH --ntasks=1
 	#SBATCH -J "${groupname}_prep_done"
 	$dependarrows
-        $userstring			
+	$userstring			
 
 	date
 	export splitdir=${splitdir}