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sebschmisebschmi
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Add debug files and message.
1 parent 17664f7 commit 3333a8f

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‎lib_ts_chainalign/src/chaining_cost_function.rs‎

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -718,7 +718,10 @@ impl<Cost: AStarCost> ChainingCostFunction<Cost> {
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.set_exact(Self::primary_start_anchor_index(), end_index);
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}
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let target = &mut self.primary[[Self::primary_start_anchor_index(), end_index]];
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assert!(*target <= cost);
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assert!(
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*target <= cost,
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"Target is larger than cost.\ntarget: {target}; cost: {cost}; is_exact: {is_exact}",
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);
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let result = *target < cost;
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*target = cost;
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result

‎test_files/twin_10_no_anchors.fa‎

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>reference
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AAAAAAAAAA
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>query
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GGGGGGGGGG

‎test_files/twin_ari_email_469.fa‎

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>REF
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TAGATATGTAAATGATCATTTTATTTAGTGCCAAAGTTCACACATCTATTTGGTCAAGTTCCCTTTGTTTCTCTACTGAGTATGTCTCCAGACACTAAAATACTAGGTTTATTCAATTCTTGCCCAGTAATTAATTTTAAAAATGTAACCCAAATTAATTGTGTCTGAAATAATTTTTCTCTTCACTAAACTTACTGACCATCTGACTGAATTGACAAATTAGATAAAAGATGATTGTGCAGGACTTTGGTGGAAAGCTCTGAACATATTCTCTGAGAAAACCCTAACAGTCAGATAACGAGTCTCATTTTACGGCCTCTTAGAATCTCAGGATTCTCACTATTCATGTGGCTTAACCTTTCACCGCTTTCATGTCCATAACAAAACATTCTGAGCATTTCTTAATTCATCAAAAGATTTTGTTTTTTCTAAATATTTCACATCCTGACAGTTAATTATTAATATTTTTCCAATTTCCCTATTTGTTTCCTCAGTAGAATGCAAGTTAACTTGCATCCATCAGTAGAATGAGATTAACATGCAATAGAAACGCAATACGGCTGTGAACCAATATGTTCTGAAATATTCAAGAATAATATACATTTATCTTTTAACAACATGGAAGTTATAGTCATGAATAGTAAAAATAACGGAAAAATCATTATCATTTTTACTAACTTTCAGGTTCTCCTTCCCAAGTATAGCCGTTGACCATGAAACGAAACTGATTTAGGTTTGGCTAGAATTATTTTTTCCTAATCAAGAGATTGCTAAGTGAAAACAAAATATTTAGAATGAATATTGGGGGAAGATAGAGATTTACTTCCTGTTACAGTAAGAAAATAACAAGGTAAGCTAAAAATCATATTTTTCCATAAAGAGAAAATAGGCATAAACTGCTGAAAATCAAATAAAAACAGAAAATCTAAAAGCAATTGCAggctgggtgcggtggctcacgcccataatcccaacactttggggggtgggatcacctgacgggggtg
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>ALT
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TAGATATGTAAATGATCATTTTATTTAGTGCCAAAGTTCACACATCTATTTGGTCAAGTTCCCTTTGTTTCTCTACTGAGTATGTCTCCAGACACTAAAATACTAGGTTTATTCAATTCTTGCCCAGTAATTAATTTTAAAAATGTAACCCAAATTAATTGTGTCTGAAATAATTTTTCTCTTCACTAAACTTACTGACCATCTGACTGAATTGACAAATTAGATAAAAGATGATTGTGCAGGACTTTGGTGGAAAGCTCTGAACATATTCTCTGAGAAAACCCTAACAGTCAGATAACGAGTCTCATTTTACGGCCTCTTAGAATCTCAGGATTCTCACTATTCATGTGGCTTAACCTTTCACCGCTTTCATGTCCATAACAAAACATTCTGAGCATTTCTTAATTCATCAAAAGATTTTGTTTTTTCTAAATATTTCACATCCTGACAGTTAATTATTAATATTTTTCCAATTTCCCTATTTGTTTCCTCAGTAGAATG-ATGTTAACTTGCATCCATCAGTAGAATGAGATTAACATGCAATAGAAACGCAATACGGCTGTGAACCAATATGTTCTGAAATATTCAAGAATAATATACATTTATCTTTTAACAACATGGAAGTTATAGTCATGAATAGTAAAAATAACGGAAAAATCATTATCATTTTTACTAACTTTCAGGTTCTCCTTCCCAAGTATAGCCGTTGACCATGAAACGAAACTGATTTAGGTTTGGCTAGAATTATTTTTTCCTAATCAAGAGATTGCTAAGTGAAAACAAAATATTTAGAATGAATATTGGGGGAAGATAGAGATTTACTTCCTGTTACAGTAAGAAAATAACAAGGTAAGCTAAAAATCATATTTTTCCATAAAGAGAAAATAGGCATAAACTGCTGAAAATCAAATAAAAACAGAAAATCTAAAAGCAATTGCAggctgggtgcggtggctcacgcccataatcccaacactttggggggtgggatcacctgacgggggtg

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