cargo run -- align --alignment-method a-star-chain-ts -c test_files/config/chainalignn -p test_files/twin_10_ts_only.f
a --log-level info -k 2 --skip-characters N-
Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.08s
Running `target/debug/tsalign align --alignment-method a-star-chain-ts -c test_files/config/chainalignn -p test_files/twin_10_ts_only.fa --log-level info -k 2 --skip-characters N-`
07:43:48 [INFO] Loading pair file "test_files/twin_10_ts_only.fa"
07:43:48 [INFO] Loading alignment config directory "test_files/config/chainalignn"
07:43:48 [WARN] No cache directory specified, dropping files into current working directory.
07:43:48 [INFO] Using k = 2
07:43:48 [INFO] Loading preprocessed data from cache at "5af62ef97ff186287afd4ba475a699cabf11038c-2-16.tsc"
07:43:48 [INFO] Aligning on subsequence R: 0..10; Q: 0..10
07:43:48 [INFO] Found 38 anchors (0 + 0 + 19 + 19 + 0) in 0ms
07:43:48 [INFO] Initialising chaining cost function...
⠁ Computing chain number 2 (cost 10->20)
thread 'main' (931937) panicked at /home/sebschmi/git/template-switch-aligner/lib_ts_chainalign/src/chain_align.rs:305:38:
No chain found
stack backtrace:
0: __rustc::rust_begin_unwind
at /rustc/ded5c06cf21d2b93bffd5d884aa6e96934ee4234/library/std/src/panicking.rs:698:5
1: core::panicking::panic_fmt
at /rustc/ded5c06cf21d2b93bffd5d884aa6e96934ee4234/library/core/src/panicking.rs:80:14
2: lib_ts_chainalign::chain_align::actually_align
at ./lib_ts_chainalign/src/chain_align.rs:305:38
3: lib_ts_chainalign::chain_align::choose_closed_list
at ./lib_ts_chainalign/src/chain_align.rs:152:13
4: lib_ts_chainalign::chain_align::align
at ./lib_ts_chainalign/src/chain_align.rs:107:41
5: lib_ts_chainalign::align
at ./lib_ts_chainalign/src/lib.rs:83:5
6: tsalign::align::a_star_chain_ts::align_a_star_chain_ts
at ./tsalign/src/align/a_star_chain_ts.rs:103:21
7: tsalign::align::execute_with_alphabet
at ./tsalign/src/align.rs:405:42
8: tsalign::align::cli
at ./tsalign/src/align.rs:274:32
9: tsalign::main
at ./tsalign/src/main.rs:26:35
10: core::ops::function::FnOnce::call_once
at /home/sebschmi/.rustup/toolchains/1.92.0-x86_64-unknown-linux-gnu/lib/rustlib/src/rust/library/core/src/ops/function.rs:250:5
note: Some details are omitted, run with `RUST_BACKTRACE=full` for a verbose backtrace.
cargo run -- align --alignment-method a-star-chain-ts -c test_files/config/chainalignn -p test_files/twin_10_ts_only.f a --log-level info -k 2 --skip-characters N- Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.08s Running `target/debug/tsalign align --alignment-method a-star-chain-ts -c test_files/config/chainalignn -p test_files/twin_10_ts_only.fa --log-level info -k 2 --skip-characters N-` 07:43:48 [INFO] Loading pair file "test_files/twin_10_ts_only.fa" 07:43:48 [INFO] Loading alignment config directory "test_files/config/chainalignn" 07:43:48 [WARN] No cache directory specified, dropping files into current working directory. 07:43:48 [INFO] Using k = 2 07:43:48 [INFO] Loading preprocessed data from cache at "5af62ef97ff186287afd4ba475a699cabf11038c-2-16.tsc" 07:43:48 [INFO] Aligning on subsequence R: 0..10; Q: 0..10 07:43:48 [INFO] Found 38 anchors (0 + 0 + 19 + 19 + 0) in 0ms 07:43:48 [INFO] Initialising chaining cost function... ⠁ Computing chain number 2 (cost 10->20) thread 'main' (931937) panicked at /home/sebschmi/git/template-switch-aligner/lib_ts_chainalign/src/chain_align.rs:305:38: No chain found stack backtrace: 0: __rustc::rust_begin_unwind at /rustc/ded5c06cf21d2b93bffd5d884aa6e96934ee4234/library/std/src/panicking.rs:698:5 1: core::panicking::panic_fmt at /rustc/ded5c06cf21d2b93bffd5d884aa6e96934ee4234/library/core/src/panicking.rs:80:14 2: lib_ts_chainalign::chain_align::actually_align at ./lib_ts_chainalign/src/chain_align.rs:305:38 3: lib_ts_chainalign::chain_align::choose_closed_list at ./lib_ts_chainalign/src/chain_align.rs:152:13 4: lib_ts_chainalign::chain_align::align at ./lib_ts_chainalign/src/chain_align.rs:107:41 5: lib_ts_chainalign::align at ./lib_ts_chainalign/src/lib.rs:83:5 6: tsalign::align::a_star_chain_ts::align_a_star_chain_ts at ./tsalign/src/align/a_star_chain_ts.rs:103:21 7: tsalign::align::execute_with_alphabet at ./tsalign/src/align.rs:405:42 8: tsalign::align::cli at ./tsalign/src/align.rs:274:32 9: tsalign::main at ./tsalign/src/main.rs:26:35 10: core::ops::function::FnOnce::call_once at /home/sebschmi/.rustup/toolchains/1.92.0-x86_64-unknown-linux-gnu/lib/rustlib/src/rust/library/core/src/ops/function.rs:250:5 note: Some details are omitted, run with `RUST_BACKTRACE=full` for a verbose backtrace.