The chapter "Data Access" of the documentation describes how to obtain the public data for the Full Analysis Example.
Users are instructed to download the zenodo repository, which sadly does not contain the needed files.
After unzipping the archive, we can see that it contains a symlink where the data file should be:
ls -l almaan-eggplant-8c499ec/data/mob/curated
> almaan-eggplant-8c499ec/data/mob/curated -> ../../../data/mob/curated
Adapting the scripts download-data.sh and make-hd5ad.py from the eggplant/data-processing/mob/ directory works perfectly fine. It would be great if the README and docs points the users to the scripts instead of the zenodo repo.
The chapter "Data Access" of the documentation describes how to obtain the public data for the Full Analysis Example.
Users are instructed to download the zenodo repository, which sadly does not contain the needed files.
After unzipping the archive, we can see that it contains a symlink where the data file should be:
Adapting the scripts
download-data.shandmake-hd5ad.pyfrom theeggplant/data-processing/mob/directory works perfectly fine. It would be great if the README and docs points the users to the scripts instead of the zenodo repo.