Subdirectories showing up at top level

[rrauenza]

I have an odd problem which is that after generating my report, a lot of my sub directories end up showing up as top level directories in the report. In fact, I even have duplicates (sort of -- duplicate names that represent different subdirectories).

My directory structure is pretty huge:

Total Size: 2,114.7 GB
Total Files: 3,396,870

Looking at settings.txt, I definitely see duplicate names (with different hashes) which aren't at the top level, but exist as two directories lower down.

I'm not sure how to do any further debugging ...

[rrauenza]

Looking more, the directories in question don't show up where they are supposed to be at all -- they are missing from the deeper subdirectory path, but rather somehow got reported only at the top of the tree.

[moltenform]

I am seeing this as well.