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‎_bibliography/papers.bib‎

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@article{tsui2026protein,
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title={Protein Circuit Tracing via Cross-layer Transcoders},
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author={Darin Tsui and Kunal Talreja and Daniel Saeedi and Amirali Aghazadeh},
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journal={arXiv:2602.12026},
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year={2026},
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website={https://protmech.github.io},
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code={https://github.com/amirgroup-codes/ProtoMech/tree/main},
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html={https://arxiv.org/pdf/2602.12026},
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preview={protomech.png},
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selected={true}
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}
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@article{saeedi2025cryosense,
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title={Can scientists detect life without knowing what it looks like? Research using machine learning offers a new way},
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author={Amirali Aghazadeh},
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html={https://openreview.net/pdf?id=1WUCSNAjjB},
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website={https://astroagents.github.io},
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preview={AstroAgents.png},
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selected={true}
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selected={false}
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}
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‎_site/404.html‎

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Aghazadeh.
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Last updated: February 12, 2026.
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</div>
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</footer>

‎_site/applicants/index.html‎

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</div>
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‎_site/assets/jupyter/blog.ipynb.html‎

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<html lang="en">
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<head><meta charset="utf-8"/>
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<meta content="width=device-width, initial-scale=1.0" name="viewport"/>
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<title>jekyll-jupyter-notebook20260212-72584-bd899a</title><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
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<title>jekyll-jupyter-notebook20260213-54408-rr2d04</title><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
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<style type="text/css">
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pre { line-height: 125%; }
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td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }

‎_site/blog/2022/index.html‎

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‎_site/blog/2024/index.html‎

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‎_site/blog/2024/tabs/index.html‎

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<p>With this you can generate visualizations like:</p>
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<ul id="log" class="tab" data-tab="cdab8df8-dcbe-4125-be43-ba324440f26a" data-name="log">
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<ul id="log" class="tab" data-tab="568906cd-b3cf-4b36-a674-e0e9dc186e26" data-name="log">
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<li class="active" id="log-php">
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<a href="#">php </a>
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</ul>
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<ul class="tab-content" id="cdab8df8-dcbe-4125-be43-ba324440f26a" data-name="log">
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<ul class="tab-content" id="568906cd-b3cf-4b36-a674-e0e9dc186e26" data-name="log">
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<div class="language-php highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nb">var_dump</span><span class="p">(</span><span class="s1">'hello'</span><span class="p">);</span>
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<h2 id="another-example">Another example</h2>
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<ul id="data-struct" class="tab" data-tab="b6492c52-6a11-484a-9397-de29d97c7af9" data-name="data-struct">
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<ul id="data-struct" class="tab" data-tab="c5c1dc1e-cf8b-4c2d-b4e8-1a88802dd59e" data-name="data-struct">
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<li class="active" id="data-struct-yaml">
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<ul class="tab-content" id="b6492c52-6a11-484a-9397-de29d97c7af9" data-name="data-struct">
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<ul class="tab-content" id="c5c1dc1e-cf8b-4c2d-b4e8-1a88802dd59e" data-name="data-struct">
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<div class="language-yaml highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="na">hello</span><span class="pi">:</span>
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<h2 id="tabs-for-something-else">Tabs for something else</h2>
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<ul id="something-else" class="tab" data-tab="0382731a-bd6d-46c9-8cd0-63ea6d8a874b" data-name="something-else">
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<ul id="something-else" class="tab" data-tab="6e3cd0a2-4cda-4182-9862-360df980f058" data-name="something-else">
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<li class="active" id="something-else-text">
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<p>Regular text</p>
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‎_site/blog/category/sample-posts/index.html‎

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‎_site/blog/tag/code/index.html‎

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‎_site/blog/tag/formatting/index.html‎

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