When run the code python /home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py -g /home/wxzheng/bin/example/UCSC.hg19.knownGene_w_gene_symbol_EnsemblChr_noGL.gtf -d database --initialize ,an error occurs as follows:
Traceback (most recent call last):
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 839, in
if name == "main": main()
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 187, in main
createAnnotTables(db_obj, db_name)
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 354, in createAnnotTables
check_same_thread = False)
File "/home/wxzheng/bin/juncBASE-1.2-beta/pysqlite_wrap.py", line 90, in createTable
cursor.execute( drop_statement )
pysqlite2.dbapi2.OperationalError: disk I/O error
When run the code
python /home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py -g /home/wxzheng/bin/example/UCSC.hg19.knownGene_w_gene_symbol_EnsemblChr_noGL.gtf -d database --initialize,an error occurs as follows:Traceback (most recent call last):
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 839, in
if name == "main": main()
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 187, in main
createAnnotTables(db_obj, db_name)
File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 354, in createAnnotTables
check_same_thread = False)
File "/home/wxzheng/bin/juncBASE-1.2-beta/pysqlite_wrap.py", line 90, in createTable
cursor.execute( drop_statement )
pysqlite2.dbapi2.OperationalError: disk I/O error