Extend endpoint syntax to support artifact exclusion

This proposal specifies a dependency exclusion approach for jgo, allowing users to exclude specific transitive dependencies from the classpath when running Java applications.

## Motivation

Maven supports `<exclusions>` blocks within `<dependency>` elements to exclude transitive dependencies. Users need equivalent functionality in jgo without creating custom pom.xml files.

Common use cases:
- **Logging conflicts**: Exclude commons-logging when using slf4j
- **Version conflicts**: Exclude older component versions when explicitly including newer ones with different G:A
- **Unwanted dependencies**: Remove unused transitive dependencies that cause classpath bloat

## Design Summary

### Three Ways to Specify Exclusions

1. **Endpoint syntax (inline)**: Exclusions specified directly in coordinate strings
   - `coord(x)` - Mark this coordinate AS a global exclusion
   - `coord(x:excl1,x:excl2)` - This coordinate HAS per-dependency exclusions

2. **jgo.toml (project mode)**: Exclusions in project configuration files
   - Global exclusions: `exclusions = ["g:a", ...]`
   - Per-coordinate: Use inline syntax in coordinate strings

3. **jgo exclude (management)**: CLI command to add/remove exclusions from jgo.toml
   - `jgo exclude add g:a`
   - `jgo exclude remove g:a`
   - `jgo exclude list`

### Design Rationale

**Why inline syntax?**
- Exclusions modify the dependency graph and must affect the cache key
- Users may need to include exclusions in shortcuts (which expand to endpoints, not CLI flags)
- Enables per-coordinate exclusions: exclude X from coordinate A but not from coordinate B

**Why no `--exclude` CLI flag?**
- Redundant with inline syntax: `+coord(x)` achieves same result
- Simplicity: One way to specify exclusions (Python philosophy)
- Consistency: Other coordinate modifiers (placement, raw) use inline syntax

**Why `jgo exclude` command?**
- Convenience for managing jgo.toml without manual editing
- Validates exclusion coordinates before writing
- Prevents syntax errors in TOML files
- Symmetry with `jgo add` and `jgo remove` for coordinates themselves

## Detailed Specification

### 1. Endpoint Syntax

All coordinate modifiers use a **unified parenthetical** with comma-separated values:

#### Grammar

```
coordinate := G:A[:V][:C][:P] [modifiers] [!] [@mainClass]
modifiers  := '(' modifier [',' modifier]* ')'
modifier   := placement | exclusion-marker | exclusion
placement  := 'c' | 'cp' | 'm' | 'mp' | 'p'
exclusion-marker := 'x'                              # this coord IS an exclusion
exclusion        := 'x:' groupId ':' artifactId      # this coord HAS this exclusion
```

**Key simplification:** Each exclusion is a separate modifier with its own `x:` prefix. This eliminates comma ambiguity - commas only separate modifiers, never parts within a modifier.

#### Two Meanings of `(x)`

**1. Exclusion Marker**: `coord(x)` - this coordinate IS a global exclusion

```bash
# Include httpclient, but globally exclude commons-logging and log4j
jgo httpclient+commons-logging:commons-logging(x)+log4j:log4j(x)
```

The marked coordinates are excluded from ALL dependencies in the dependency graph.

**2. Exclusion List**: `coord(x:excl1,x:excl2)` - this coordinate HAS per-dependency exclusions

```bash
# Include httpclient, but exclude commons-logging only from httpclient's dependency tree
jgo httpclient(x:commons-logging:commons-logging)
```

The exclusions apply only to the specified coordinate's transitive dependencies.

#### Multiple Exclusions

Specify multiple exclusions by repeating the `x:` modifier:

```bash
# Exclude multiple dependencies from httpclient
jgo httpclient(x:commons-logging:commons-logging,x:commons-codec:commons-codec)
```

#### Wildcard Support

Maven-style wildcards (`*`) are supported for groupId or artifactId:

```bash
# Exclude all artifacts from org.slf4j group
jgo spring-web(x:org.slf4j:*)

# Exclude commons-logging from any group
jgo httpclient(x:*:commons-logging)
```

#### Combining Modifiers

Multiple modifiers can coexist in one parenthetical (order independent):

```bash
# Placement + exclusions
jgo httpclient(c,x:commons-logging:commons-logging)
jgo httpclient(x:commons-logging:commons-logging,c)  # same thing

# Multiple exclusions + placement + raw flag
jgo httpclient:4.5.14(c,x:commons-logging:commons-logging,x:commons-codec:commons-codec)!

# Module-path + exclusions
jgo lwjgl:3.3.1(m,x:lwjgl-opengl:lwjgl-opengl)
```

**Key properties:**
- **Single parenthetical** - no ambiguity about ordering
- **Comma-separated** - readable and familiar
- **Order independent** - `(c,x:...)` equals `(x:...,c)`
- **Extensible** - easy to add new modifiers
- **Raw flag `!` always last** - logical termination symbol

#### Examples

**Basic global exclusion:**
```bash
jgo httpclient+commons-logging:commons-logging(x)
```

**Per-coordinate exclusion:**
```bash
jgo httpclient(x:commons-logging:commons-logging)+spring-web
```

**Multiple per-coordinate exclusions:**
```bash
jgo spring-web(x:commons-logging:commons-logging,x:log4j:log4j)
```

**Combined with placement modifiers:**
```bash
jgo lwjgl:3.3.1(m,x:lwjgl-opengl:lwjgl-opengl)
```

**Complex scenario with main class:**
```bash
jgo 'httpclient(x:commons-logging:commons-logging)+lwjgl:3.3.1(m)@MyApp'
```

#### Shortcuts with Exclusions

Shortcuts can include exclusions since they're part of the coordinate syntax:

```ini
# ~/.config/jgo.conf
[shortcuts]
# Per-coordinate exclusions
httpclient-clean = httpclient:4.5.14(x:commons-logging:commons-logging,x:commons-codec:commons-codec)
spring-clean = spring-web(x:commons-logging:commons-logging,x:log4j:log4j)

# Exclusions + placement
lwjgl-modular = lwjgl:3.3.1(m,x:lwjgl-opengl:lwjgl-opengl)

# Global exclusion markers
no-logging = httpclient+commons-logging:commons-logging(x)+log4j:log4j(x)
```

Usage:
```bash
jgo httpclient-clean
jgo spring-clean@MyApp
jgo lwjgl-modular
```

### 2. jgo.toml Integration

#### Global Exclusions

Global exclusions apply to all dependencies in the environment:

```toml
[environment]
name = "my-app"

[dependencies]
coordinates = [
    "org.springframework:spring-web:5.3.20",
    "org.apache.httpcomponents:httpclient:4.5.13"
]

# Global exclusions - applied to ALL dependencies above
exclusions = [
    "commons-logging:commons-logging",
    "log4j:log4j"
]
```

#### Per-Coordinate Exclusions

Use inline endpoint syntax directly in coordinate strings:

```toml
[dependencies]
coordinates = [
    # Exclude commons-logging only from httpclient
    "org.apache:httpclient:4.5.14(x:commons-logging:commons-logging)",

    # Exclude multiple dependencies from spring-web
    "org.springframework:spring-web:5.3.20(x:commons-logging:commons-logging,x:log4j:log4j)",

    # Regular coordinate without exclusions
    "org.slf4j:slf4j-api:1.7.32"
]
```

**Rationale for inline syntax:**
- Reuses existing endpoint parsing logic
- No special TOML schema needed
- Clear and self-documenting
- Consistent with CLI usage

#### Complete Example

```toml
[environment]
name = "web-app"

[dependencies]
# Mix of global and per-coordinate exclusions
coordinates = [
    # This has its own exclusions
    "org.apache:httpclient:4.5.14(x:commons-codec:commons-codec)",

    # This one too
    "org.springframework:spring-web:5.3.20(x:log4j:log4j)",

    # This gets global exclusions only
    "org.slf4j:slf4j-api:1.7.32"
]

# These apply to ALL coordinates
exclusions = [
    "commons-logging:commons-logging"
]

[entrypoints]
default = "com.example.WebApp"
```

**Effective exclusions:**
- httpclient: excludes commons-logging (global) + commons-codec (per-coord)
- spring-web: excludes commons-logging (global) + log4j (per-coord)
- slf4j-api: excludes commons-logging (global only)

### 3. jgo exclude Command

Manage exclusions in jgo.toml files via CLI.

#### Command Syntax

```bash
# Add global exclusion
jgo exclude add <groupId>:<artifactId>

# Remove global exclusion
jgo exclude remove <groupId>:<artifactId>

# List all exclusions
jgo exclude list

# Add exclusion to specific coordinate (optional feature)
jgo exclude add --coordinate <coordinate> <exclusion>
```

#### Options

- `--file FILE` or `-f FILE`: Path to jgo.toml (default: ./jgo.toml)
- `--coordinate <coordinate>`: Coordinate to modify with the exclusion

#### Examples

**Add global exclusion:**
```bash
jgo exclude add commons-logging:commons-logging
# Adds to [dependencies] exclusions array in jgo.toml
```

**Remove global exclusion:**
```bash
jgo exclude remove commons-logging:commons-logging
# Removes from [dependencies] exclusions array
```

**List all exclusions:**
```bash
jgo exclude list
# Output:
# Global exclusions:
#   - commons-logging:commons-logging
#   - log4j:log4j
#
# Per-coordinate exclusions:
#   org.apache:httpclient:4.5.14
#     - commons-codec:commons-codec
#   org.springframework:spring-web:5.3.20
#     - log4j:log4j
```

**Add per-coordinate exclusion (optional):**
```bash
jgo exclude add --coordinate httpclient:4.5.14 commons-logging:commons-logging
# Modifies the coordinate string in jgo.toml to add x:commons-logging:commons-logging modifier
```

#### Behavior

**Adding exclusions:**
1. Validate exclusion coordinate format (groupId:artifactId)
2. Load existing jgo.toml
3. Check if exclusion already exists (idempotent)
4. Add to `[dependencies] exclusions` array
5. Write updated jgo.toml (preserve formatting where possible)
6. Print confirmation message

**Removing exclusions:**
1. Validate exclusion coordinate format
2. Load existing jgo.toml
3. Remove from exclusions array (no error if not present)
4. Write updated jgo.toml
5. Print confirmation message

**Listing exclusions:**
1. Load jgo.toml
2. Parse global exclusions from `[dependencies] exclusions`
3. Parse per-coordinate exclusions from coordinate strings
4. Display grouped by type (global vs per-coordinate)

**Error handling:**
- No jgo.toml exists: Create new file with minimal structure
- Invalid coordinate format: Print error and exit
- TOML syntax error: Print error and suggest manual fix
- File not writable: Print error with permission details

#### Implementation Notes

The `jgo exclude` command modifies jgo.toml programmatically using a TOML library (e.g., `tomli`/`tomli-w`).

**For global exclusions:**
- Simple array manipulation in `[dependencies] exclusions`

**For per-coordinate exclusions (optional feature):**
- Parse existing coordinate string
- Add/remove exclusion from `(x:...)` modifier
- Reconstruct coordinate string
- Replace in coordinates array

**Preservation of comments:**
- Best-effort preservation using TOML library features
- Document that some formatting may be lost during automated edits

## Technical Implementation

### 1. Parsing

Extend coordinate parsing in `src/jgo/parse/endpoint.py`:

```python
def parse_coordinate_modifiers(coordinate: str) -> tuple[str, dict]:
    """
    Parse unified parenthetical modifiers from a coordinate string.

    Returns: (coordinate_without_modifiers, modifiers_dict)

    Example:
        >>> parse_coordinate_modifiers("httpclient:4.5.14(c,x:commons-logging:commons-logging,x:log4j:log4j)!")
        ("httpclient:4.5.14", {
            'placement': 'class-path',
            'exclusions': [
                Project(groupId='commons-logging', artifactId='commons-logging'),
                Project(groupId='log4j', artifactId='log4j')
            ],
            'is_exclusion': False,
            'raw': True
        })
    """
    modifiers = {
        'placement': None,        # 'class-path' | 'module-path' | None
        'exclusions': [],         # list[Project]
        'is_exclusion': False,    # bool (this coord IS an exclusion)
        'raw': False              # bool (disable dependency management)
    }

    # 1. Check for raw flag (always at end)
    if coordinate.endswith('!'):
        modifiers['raw'] = True
        coordinate = coordinate[:-1]

    # 2. Extract single parenthetical (if present)
    if '(' in coordinate:
        match = re.search(r'$([^)]+)$$', coordinate)
        if match:
            modifier_str = match.group(1)
            coordinate = coordinate[:match.start()]

            # 3. Parse comma-separated modifiers
            for modifier in modifier_str.split(','):
                modifier = modifier.strip()

                # Placement modifiers
                if modifier in ('c', 'cp'):
                    modifiers['placement'] = 'class-path'
                elif modifier in ('m', 'mp', 'p'):
                    modifiers['placement'] = 'module-path'

                # Exclusion marker (this coord IS an exclusion)
                elif modifier == 'x':
                    modifiers['is_exclusion'] = True

                # Exclusion (this coord HAS this exclusion)
                elif modifier.startswith('x:'):
                    excl_str = modifier[2:]  # Strip 'x:'
                    # Parse groupId:artifactId
                    if ':' in excl_str:
                        parts = excl_str.split(':', 1)
                        if len(parts) == 2:
                            groupId, artifactId = parts
                            modifiers['exclusions'].append(
                                Project(groupId=groupId, artifactId=artifactId)
                            )

    return coordinate, modifiers
```

**Parsing strategy:**
1. Strip `!` raw flag (always last)
2. Extract single `(...)` parenthetical
3. Simple comma-split to get modifiers (no special cases needed!)
4. Parse each modifier: placement (`c`, `m`, etc.), exclusion marker (`x`), or exclusion (`x:g:a`)
5. Return cleaned coordinate + modifiers dict

**Key simplification:** No need for complex state machines or special splitting logic. Each `x:groupId:artifactId` is a complete, self-contained modifier.

### 2. Cache Key Integration ✅ **IMPLEMENTED**

Exclusions must affect the cache key since they modify the dependency graph.

**Implemented design:** Changed to use `list[Dependency]` which includes exclusions, classifier, and packaging.

```python
def _cache_key(self, dependencies: list[Dependency]) -> str:
    """
    Generate a stable hash for a set of dependencies.

    Uses full artifact coordinates (G:A:V:C:P) plus exclusions to ensure:
    - Different classifiers get different caches (e.g., natives-linux vs natives-windows)
    - Different packaging types get different caches
    - Different exclusions get different caches (different dependency trees)

    Args:
        dependencies: List of Dependency objects with full coordinate info and exclusions

    Returns:
        16-character hex hash string
    """
    # Sort to ensure stable ordering
    # Use resolved version to ensure RELEASE/LATEST resolve to consistent cache keys
    coord_strings = []
    for dep in sorted(
        dependencies,
        key=lambda d: (
            d.artifact.groupId,
            d.artifact.artifactId,
            d.artifact.version,  # Resolved version
            d.artifact.classifier,
            d.artifact.packaging,
        ),
    ):
        # Include full artifact coordinates: G:A:V:C:P
        coord_str = (
            f"{dep.artifact.groupId}:"
            f"{dep.artifact.artifactId}:"
            f"{dep.artifact.version}:"
            f"{dep.artifact.classifier}:"
            f"{dep.artifact.packaging}"
        )

        # Include exclusions for this dependency
        if dep.exclusions:
            excl_strs = sorted(
                [f"{e.groupId}:{e.artifactId}" for e in dep.exclusions]
            )
            coord_str += f":excl={','.join(excl_strs)}"

        coord_strings.append(coord_str)

    combined = "+".join(coord_strings)

    # Include optional_depth in cache key
    # This ensures different optional_depth values get separate cache directories
    combined += f":optional_depth={self.optional_depth}"

    return hashlib.sha256(combined.encode()).hexdigest()[:16]
```

**Helper methods for conversion:**

```python
def _coordinates_to_dependencies(
    self, coordinates: list[Coordinate]
) -> list[Dependency]:
    """
    Convert Coordinate objects to Dependency objects for cache key generation.
    Preserves classifier, packaging, and exclusion information.
    """
    dependencies = []
    for coord in coordinates:
        version = coord.version or "RELEASE"
        component = self.context.project(coord.groupId, coord.artifactId).at_version(version)

        # Create Artifact with classifier and packaging (G:A:V:C:P)
        classifier = coord.classifier or ""
        packaging = coord.packaging or "jar"
        artifact = component.artifact(classifier=classifier, packaging=packaging)

        # Create Dependency with scope and exclusions
        # TODO: Parse exclusions from coord when exclusion syntax is implemented
        scope = coord.scope or "compile"
        optional = coord.optional or False
        exclusions = []  # Will be populated when exclusion parsing is added

        dependency = Dependency(
            artifact=artifact,
            scope=scope,
            optional=optional,
            exclusions=exclusions,
        )
        dependencies.append(dependency)

    return dependencies

def _components_to_dependencies(
    self, components: list[Component]
) -> list[Dependency]:
    """
    Convert Component objects to Dependency objects with default classifier/packaging.
    Backward compatibility helper for code that still uses Components.
    """
    dependencies = []
    for component in components:
        artifact = component.artifact(classifier="", packaging="jar")
        dependency = Dependency(
            artifact=artifact,
            scope="compile",
            optional=False,
            exclusions=[],
        )
        dependencies.append(dependency)
    return dependencies
```

**Key improvements:**
- ✅ Exclusions baked into Dependency objects (no separate parameters needed)
- ✅ Classifier and packaging included (fixes LWJGL natives bug)
- ✅ Single source of truth for cache key components
- ✅ Ready for exclusion feature (just need to populate `exclusions` field)

### 3. Dependency Resolution Integration

Pass exclusions to Maven resolver when creating synthetic POM:

```python
def create_pom_with_exclusions(
    components: list[Component],
    boms: list[Component] | None,
    global_exclusions: list[Project] | None = None,
    per_coord_exclusions: dict[Component, list[Project]] | None = None
) -> POM:
    """
    Create a synthetic wrapper POM with dependency exclusions.

    Args:
        components: Components to include as dependencies
        boms: BOM imports for dependencyManagement
        global_exclusions: Exclusions applied to all dependencies
        per_coord_exclusions: Per-component exclusions

    Returns:
        POM object representing the synthetic wrapper
    """
    dependencies = []

    for comp in components:
        artifact = comp.artifact()

        # Merge global and per-coordinate exclusions
        exclusions = (global_exclusions or []).copy()
        if per_coord_exclusions and comp in per_coord_exclusions:
            exclusions.extend(per_coord_exclusions[comp])

        # Remove duplicates while preserving order
        seen = set()
        unique_exclusions = []
        for excl in exclusions:
            key = (excl.groupId, excl.artifactId)
            if key not in seen:
                seen.add(key)
                unique_exclusions.append(excl)

        dep = Dependency(
            artifact=artifact,
            scope="compile",
            exclusions=tuple(unique_exclusions)
        )
        dependencies.append(dep)

    # Create wrapper POM with dependencies
    return create_wrapper_pom(dependencies, boms)
```

### 4. EnvironmentBuilder Updates

Extend `EnvironmentBuilder` to handle exclusions:

```python
class EnvironmentBuilder:
    def __init__(
        self,
        context: MavenContext,
        cache_dir: Path | None = None,
        link_strategy: LinkStrategy = LinkStrategy.AUTO,
        optional_depth: int = 0,
        global_exclusions: list[Project] | None = None,
        per_coord_exclusions: dict[Component, list[Project]] | None = None,
    ):
        self.context = context
        self.link_strategy = link_strategy
        self.optional_depth = optional_depth
        self.global_exclusions = global_exclusions or []
        self.per_coord_exclusions = per_coord_exclusions or {}
        # ... rest of initialization
```

## Complete Examples

### Example 1: Exclude Commons Logging Globally

**Problem:** Multiple dependencies pull in commons-logging, but you want to use slf4j.

**Solution:**

```bash
# Using inline syntax
jgo httpclient+spring-web+commons-logging:commons-logging(x)
```

### Example 2: Per-Coordinate Exclusions

**Problem:** Want different exclusions for different coordinates.

**Solution:**

```bash
# Exclude commons-logging from httpclient, log4j from spring-web
jgo httpclient(x:commons-logging:commons-logging)+spring-web(x:log4j:log4j)
```

### Example 3: Project with jgo.toml

**Setup:**

```toml
# jgo.toml
[environment]
name = "web-app"

[dependencies]
coordinates = [
    "org.springframework:spring-web:5.3.20(x:log4j:log4j)",
    "org.apache:httpclient:4.5.14",
]

# Global exclusion for commons-logging
exclusions = [
    "commons-logging:commons-logging"
]

[entrypoints]
default = "com.example.WebApp"
```

**Usage:**

```bash
# Initialize environment
jgo sync

# Run default entrypoint
jgo run

# Add another global exclusion
jgo exclude add org.slf4j:slf4j-log4j12

# List all exclusions
jgo exclude list
```

### Example 4: Shortcuts with Exclusions

**Setup:**

```ini
# ~/.config/jgo.conf
[shortcuts]
httpclient-clean = httpclient:4.5.14(x:commons-logging:commons-logging,x:commons-codec:commons-codec)
spring-minimal = spring-web:5.3.20(x:commons-logging:commons-logging,x:log4j:log4j)
```

**Usage:**

```bash
jgo httpclient-clean@org.example.HttpDemo
jgo spring-minimal+slf4j-simple@org.example.WebDemo
```

### Example 5: Complex Multi-Coordinate Setup

**Scenario:** Spring web app with LWJGL on module-path, excluding problematic logging libraries.

```bash
jgo 'spring-web:5.3.20(c,x:commons-logging:commons-logging,x:log4j:log4j)+lwjgl:3.3.1(m)+commons-logging:commons-logging(x)@WebApp'
```

**Breakdown:**
- `spring-web:5.3.20(c,x:commons-logging:commons-logging,x:log4j:log4j)` - Spring on classpath, excludes its commons-logging and log4j
- `lwjgl:3.3.1(m)` - LWJGL on module-path
- `commons-logging:commons-logging(x)` - Global exclusion marker for commons-logging
- `@WebApp` - Main class

## Benefits

1. **Resolves dependency conflicts**: Exclude problematic transitive dependencies
2. **Consistent with Maven**: Uses same exclusion semantics as Maven POMs
3. **Cache-aware**: Different exclusions create separate cached environments
4. **Composable**: Works seamlessly with existing jgo features (+, @, !, placement modifiers)
5. **Flexible**: Supports both global and per-coordinate exclusions
6. **Shortcut-compatible**: Exclusions can be embedded in shortcuts
7. **Simple**: One primary syntax (inline), with convenience command for jgo.toml

## Open Questions

### 1. Validation

**Question:** Should we validate that excluded dependencies actually exist in the resolved tree?

**Decision:** No validation (following Maven's approach).

**Rationale:**
- Maven doesn't validate exclusions
- Allows "defensive" exclusions that may not always be present
- Simpler implementation
- Avoids coupling exclusion spec to resolution results

### 2. Wildcard Exclusion Scope

**Question:** Should wildcards in per-coordinate exclusions (`coord(x:org.slf4j:*)`) apply transitively?

**Decision:** Yes, follow Maven semantics (wildcards apply transitively).

**Example:**
```
A depends on B depends on slf4j-simple
A(x:org.slf4j:*) excludes slf4j-simple even though it's transitive
```

### 3. jgo exclude --coordinate Feature

**Question:** Should `jgo exclude` support per-coordinate exclusions or only global?

**Options:**
- **Option A:** Only global exclusions (simpler)
- **Option B:** Support per-coordinate via `--coordinate` flag (more features)

**Recommendation:** Start with Option A (global only). Users can manually edit jgo.toml for per-coordinate exclusions. Add Option B later if demand exists.

## Implementation Checklist

### Phase 1: Core Parsing and Syntax

- [ ] Implement `parse_coordinate_modifiers()` with exclusion support
- [ ] Add wildcard support (`*` for groupId/artifactId)
- [ ] Handle combined modifiers (placement + exclusions)
- [ ] Ensure `!` raw flag processed after parenthetical
- [ ] Add unit tests for all parsing edge cases
- [ ] Test repeated `x:` modifiers work correctly

### Phase 2: Exclusion Integration

- [x] ✅ Extend `_cache_key()` to include exclusions (uses Dependency objects)
- [x] ✅ Update `_cache_key()` to include classifier and packaging (fixes LWJGL bug)
- [x] ✅ Add `_coordinates_to_dependencies()` helper method
- [x] ✅ Add `_components_to_dependencies()` compatibility helper
- [x] ✅ Update `from_components()` to accept optional coordinates parameter
- [x] ✅ Update `from_spec()` to preserve coordinates for cache key
- [x] ✅ Add tests for cache key with classifiers and packaging
- [ ] Update `EnvironmentBuilder` to accept global and per-coord exclusions
- [ ] Update `create_pom()` to propagate exclusions to dependencies
- [ ] Implement exclusion merging logic (global + per-coord)
- [ ] Add exclusion deduplication
- [ ] Update POM generation to include `<exclusions>` blocks

### Phase 3: jgo.toml Support

- [ ] Add `exclusions` field to TOML schema
- [ ] Parse global exclusions from `[dependencies] exclusions`
- [ ] Parse per-coordinate exclusions from inline syntax
- [ ] Update `jgo sync` to handle exclusions
- [ ] Update lockfile to record effective exclusions
- [ ] Add validation for exclusion coordinate format

### Phase 4: jgo exclude Command

- [ ] Implement `jgo exclude add` subcommand
- [ ] Implement `jgo exclude remove` subcommand
- [ ] Implement `jgo exclude list` subcommand
- [ ] Add `--file` option for custom jgo.toml paths
- [ ] Implement TOML loading and updating
- [ ] Add coordinate validation
- [ ] Add error handling (missing file, invalid TOML, etc.)
- [ ] Preserve TOML formatting where possible

### Phase 5: Testing

- [ ] Unit tests for `(x)` marker (global exclusion)
- [ ] Unit tests for repeated `x:` modifiers: `(x:excl1,x:excl2)`
- [ ] Unit tests for combined modifiers: `(c,x:...,x:...)`
- [ ] Unit tests for order independence
- [ ] Unit tests for wildcard exclusions
- [ ] Integration tests with real Maven artifacts
- [ ] Test shortcuts with exclusions
- [ ] Test jgo.toml with exclusions
- [ ] Test `jgo exclude` command operations
- [ ] Test cache key changes with exclusions

### Phase 6: Documentation

- [ ] Update README.md with exclusion examples
- [ ] Document exclusion syntax in user guide
- [ ] Add exclusion examples to cookbook
- [ ] Document jgo.toml exclusions field
- [ ] Document `jgo exclude` command
- [ ] Add migration guide for cache key changes
- [ ] Update grammar specification

## Alternatives Considered

### CLI Flags Only

**Proposal:** Use only `--exclude` flags without inline syntax.

```bash
jgo --exclude commons-logging:commons-logging httpclient
```

**Rejected because:**
- Cannot include exclusions in shortcuts (deal-breaker)
- Less flexible for per-coordinate exclusions
- Doesn't affect cache key naturally (needs special handling)
- Verbose when same exclusions needed repeatedly

### Special Character Syntax

**Proposal:** Use symbols like `~`, `^`, or `/` instead of `(x)`.

```bash
jgo httpclient~commons-logging:commons-logging  # tilde
jgo httpclient^commons-logging:commons-logging  # caret
jgo httpclient/commons-logging:commons-logging  # slash
```

**Rejected because:**
- `~` and `^` have version semantics in poetry
- Less self-documenting than `(x)`
- Harder to distinguish from coordinate body
- Shell escaping issues
- Inconsistent with existing `(...)` placement modifiers

### Multiple Separate Parentheticals

**Proposal:** Allow multiple parentheticals instead of unified syntax.

```bash
jgo httpclient(c)(x:excl1)(x:excl2)!
```

**Rejected because:**
- Order ambiguity (does `(c)` come before or after `(x:...)`?)
- More verbose
- Harder to parse (multiple passes)
- Less readable

### Configuration File Only

**Proposal:** Require jgo.toml for all exclusions.

**Rejected because:**
- Too heavyweight for quick one-off runs
- No support for shortcuts with exclusions
- Inconsistent with other jgo features
- Doesn't solve ad-hoc use cases

---

## Summary

This design provides a comprehensive, coherent exclusion system for jgo:

- **One primary syntax**: Inline `(x)` and `(x:...)` modifiers
- **Three access methods**: Direct inline, jgo.toml, jgo exclude command
- **Two exclusion scopes**: Global (apply everywhere) and per-coordinate (apply to one dependency)
- **Cache-aware**: Exclusions properly affect cache keys
- **Maven-compatible**: Semantics match Maven's `<exclusions>` blocks

The system is simple, composable, and consistent with jgo's existing design principles.


Uh oh!

Extend endpoint syntax to support artifact exclusion #102

Description

Motivation

Design Summary

Three Ways to Specify Exclusions

Design Rationale

Detailed Specification

1. Endpoint Syntax

Grammar

Two Meanings of (x)

Multiple Exclusions

Wildcard Support

Combining Modifiers

Examples

Shortcuts with Exclusions

2. jgo.toml Integration

Global Exclusions

Per-Coordinate Exclusions

Complete Example

3. jgo exclude Command

Command Syntax

Options

Examples

Behavior

Implementation Notes

Technical Implementation

1. Parsing

2. Cache Key Integration ✅ IMPLEMENTED

3. Dependency Resolution Integration

4. EnvironmentBuilder Updates

Complete Examples

Example 1: Exclude Commons Logging Globally

Example 2: Per-Coordinate Exclusions

Example 3: Project with jgo.toml

Example 4: Shortcuts with Exclusions

Example 5: Complex Multi-Coordinate Setup

Benefits

Open Questions

1. Validation

2. Wildcard Exclusion Scope

3. jgo exclude --coordinate Feature

Implementation Checklist

Phase 1: Core Parsing and Syntax

Phase 2: Exclusion Integration

Phase 3: jgo.toml Support

Phase 4: jgo exclude Command

Phase 5: Testing

Phase 6: Documentation

Alternatives Considered

CLI Flags Only

Special Character Syntax

Multiple Separate Parentheticals

Configuration File Only

Summary

Metadata

Metadata

Assignees

Labels

Type

Fields

Projects

Milestone

Relationships

Development

Issue actions

Two Meanings of `(x)`