During the june-1 shakeout, minimal jobs failed on datasets whose BOLD metadata lives at the dataset root (BIDS Inheritance Principle). babs ships only dataset_description.json into each job, so the root-inherited sidecars (task-*_bold.json with RepetitionTime / PhaseEncodingDirection / readout timing) get dropped from the sparse-checkout and fmriprep can't resolve them. anat-only passes because it doesn't read those BOLD fields.
Affected:
RepetitionTime KeyError: ds001894, ds002843, ds003097, ds004636- readout-timing ValueError: ds004169, ds004884
Will be fixed by PennLINC/babs#376 (adds common_paths). Requirements + tested details: PennLINC/babs#376 (comment)
Done when: these 6 datasets reprocess through minimal successfully.
During the june-1 shakeout,
minimaljobs failed on datasets whose BOLD metadata lives at the dataset root (BIDS Inheritance Principle). babs ships onlydataset_description.jsoninto each job, so the root-inherited sidecars (task-*_bold.jsonwithRepetitionTime/PhaseEncodingDirection/ readout timing) get dropped from the sparse-checkout and fmriprep can't resolve them. anat-only passes because it doesn't read those BOLD fields.Affected:
RepetitionTimeKeyError: ds001894, ds002843, ds003097, ds004636Will be fixed by
PennLINC/babs#376(addscommon_paths). Requirements + tested details: PennLINC/babs#376 (comment)Done when: these 6 datasets reprocess through
minimalsuccessfully.