DESCRIPTION

Package: GeoDiff
Type: Package
Title: Count model based differential expression and normalization on GeoMx RNA data
Version: 1.1.3
Authors@R: c(person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("cre")),
             person("Lei", "Yang", email = "lyang@nanostring.com", role = c("aut")), 
             person("Zhi", "Yang", email = "zyang@nanostring.com", role = c("aut")),
             person("Ned", "Booker", email = "ned@procogia.com", role = c("aut")))
Description: A series of statistical models using count generating distributions 
    for background modelling, feature and sample QC, normalization and differential 
    expression analysis on GeoMx RNA data. The application of these methods are 
    demonstrated by example data analysis vignette.
Imports:
    Matrix,
    robust,
    plyr,
    lme4,
    Rcpp (>= 1.0.4.6), 
    Rfast,
    withr,
    methods,
    graphics,
    stats,
    testthat,
    GeomxTools,
    NanoStringNCTools
LinkingTo: Rcpp, RcppArmadillo, roptim  
License: MIT + file LICENSE
URL: https://github.com/Nanostring-Biostats/GeoDiff
BugReports: https://github.com/Nanostring-Biostats/GeoDiff
Encoding: UTF-8
Suggests: 
    knitr,
    rmarkdown,
    dplyr
VignetteBuilder: knitr
Depends: 
    R (>= 4.1.0),
    Biobase
RoxygenNote: 7.1.2
biocViews: GeneExpression, DifferentialExpression, Normalization