DESCRIPTION

Package: pcgen2
Title: Reconstruction of Causal Networks for Data with Random Genetic Effects
Version: 0.2.0.9999
Authors@R: 
    c(person("Willem", "Kruijer", role = c("aut"), email = "willem.kruijer@wur.nl"),
      person("Pariya", "Behrouzi", role = c("aut"), email = "pariya.behrouzi@gmail.com"),
      person("Maria Xose", "Rodriguez-Alvarez", role = "ctb"),
      person("Azza", "Ahmed", role = c("aut", "cre"), email = "azzaea@gmail.com"))
Description: Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm,
             with specific conditional independence tests and modified orientation rules. pcgen extends
             the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of 
             direct genetic effects.
License: GPL-3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: 
    pcalg,
    graph,
    Matrix,
    stats,
    MASS,
    utils,
    Hmisc,
    methods,
    lme4,
    sommer,
    ggm,
    gaston,
    Rcpp
Suggests: 
    testthat (>= 3.0.0),
    knitr,
    rmarkdown
VignetteBuilder: knitr
Depends: 
    R (>= 2.10)
Config/testthat/edition: 3
LinkingTo: 
    Rcpp,
    RcppGSL
SystemRequirements: GNU make