neurosurf/DESCRIPTION at master · bbuchsbaum/neurosurf · GitHub

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Package: neurosurf
Type: Package
Title: Data Structures and Visualization for Surface-Based Neuroimaging Data
Version: 0.1.0
Authors@R: c(
    person(c("Bradley", "R"), "Buchsbaum", role = c("aut", "cre", "cph"), email = "brad.buchsbaum@gmail.com"))
Description: A comprehensive toolkit for working with surface-based neuroimaging data
    represented as triangle meshes. The package provides classes and methods for
    creating, manipulating, and visualizing 3D surface geometries (e.g., cortical
    surfaces), with support for various file formats including FreeSurfer and GIFTI.
    Key features include: surface smoothing, curvature computation, neighborhood graph
    construction, geodesic distance calculations, searchlight analysis for surface-based
    machine learning, and interactive 3D visualization via HTMLWidgets. The package
    facilitates advanced surface-based analyses through specialized data structures
    for representing surface geometry and associated functional data.
Imports:
    Matrix,
    igraph,
    rgl,
    assertthat,
    digest,
    neuroim2,
    colorplane,
    FNN,
    readr,
    stringr,
    plyr,
    Rvcg,
    methods,
    gplots,
    gifti,
    htmlwidgets,
    deflist,
    fastmap,
    crayon,
    png,
    Rcpp
LinkingTo: Rcpp, RcppArmadillo, roptim
License: GPL (>= 2)
RoxygenNote: 7.3.3
Collate:
    'all_generic.R'
    'all_class.R'
    'Arith.R'
    'IO.R'
    'ROI.R'
    'RcppExports.R'
    'Searchlight.R'
    'curv.R'
    'example_helpers.R'
    'fetch_surfaces.R'
    'gaussian_splat.R'
    'geodesic.R'
    'geometry.R'
    'neighborhood.R'
    'neuro_surface.R'
    'neurosurf.R'
    'roi_boundaries.R'
    'sdf_alignment.R'
    'snapshot_surface.R'
    'spec.R'
    'surface_plot.R'
    'surface_set.R'
    'surfwidget.R'
    'testdata.R'
    'view_surface.R'
    'vol_to_surf.R'
    'vol_to_surf_sdf.R'
    'zzz.R'
Suggests:
    callr,
    testthat,
    covr,
    bench,
    knitr,
    rmarkdown,
    webshot2,
    ggplot2,
    viridis,
    albersdown,
    rappdirs
URL: https://github.com/bbuchsbaum/neurosurf
BugReports: https://github.com/bbuchsbaum/neurosurf/issues
VignetteBuilder: knitr
Encoding: UTF-8
Config/Needs/website: albersdown