referent/_pkgdown.yml at main · bbuchsbaum/referent · GitHub

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url: https://bbuchsbaum.github.io/referent

starlightdown:
  theme: default
  quickstart: |
    library(referent)
    reference <- ref_simulate(300, seed = 1)
    fit <- ref_fit(
      ref_spec(ref_gaussian(), ~ s(age, k = 8) + sex),
      data = reference,
      outcomes = "y"
    )
    scores <- predict(fit, newdata = ref_simulate(100, seed = 2))

articles:
- title: Learn referent
  contents:
  - getting-started
  - validate-reference
  - brain-charts-across-sites
  - longitudinal-change
  - pcntoolkit
  - troubleshooting

reference:
- title: Specify, fit, and predict
  desc: Define a conditional distribution, fit it, and place new observations.
  contents:
  - ref_spec
  - ref_family
  - ref_fit
  - predict.ref_fit
- title: Score profiles
  desc: Work with predictive distributions and individual deviation scores.
  contents:
  - as_scores
  - dist_shash
  - ref_flag
  - ref_joint
- title: Select and validate models
  desc: Use out-of-sample evidence to choose and check a reference model.
  contents:
  - ref_crossfit
  - ref_select
  - ref_assess
- title: Transport a reference
  desc: Check support, adapt or calibrate a new site, and freeze the result.
  contents:
  - ref_support
  - ref_adapt
  - ref_calibrate
  - ref_freeze
  - ref_write
- title: Model longitudinal change
  desc: Estimate within-person dependence, transitions, forecasts, and chart velocity.
  contents:
  - ref_process
  - ref_dynamics
  - ref_transition
  - ref_forecast
  - ref_derivative
- title: Summarise and visualise
  desc: Turn fitted models and scores into compact tables and graphics.
  contents:
  - tidy.ref_fit
  - autoplot.ref_fit
  - fortify_centiles
  - theme_referent
- title: Simulate examples
  contents:
  - ref_simulate