...running Tokyo Cabinet sonLibKVDatabase tests
Running test case readWriteAndRemoveRecords
Exception: ST_KV_DATABASE_EXCEPTION: requested Tokyo Cabinet database, however sonlib is not compiled with Tokyo Cabinet support
Uncaught exception
ERunning test case test_st_logging
OKAY This is important, really
OKAY Bar foo
OKAY This is important, really
OKAY Hello world
OKAY Bar foo
OKAY This is important, really
Running test case test_st_system
1
Running test case test_stTree_construct
Running test case test_stTree_getSetParent
Running test case test_stTree_getChildNumber
Running test case test_stTree_getChild
sh: Running test case test_stTree_getSetBranchLength
thisProgramDoesNotExist: not found
Running test case test_stTree_getSetClientData
Running test case test_stTree_newickTreeParser
Running test case test_stTree_label
Running test case test_stTree_getNumNodes
Running test case test_stTree_equals
Running test case test_stTree_clone
Running test case test_stString_copy
Running test case test_stString_print
Running test case test_stString_getNextWord
Running test case test_stString_replace
Running test case test_stString_join
Running test case test_stString_join2
Running test case test_stString_split
Running test case test_stString_getSubString
Running test case test_stIntTuple_construct
Running test case test_stIntTuple_hashKey
Running test case test_stIntTuple_cmpFn
Running test case test_stIntTuple_equalsFn
Running test case test_stIntTuple_length
Running test case test_stIntTuple_getPosition
Running test case test_stInt64Tuple_construct
Running test case test_stInt64Tuple_hashKey
Running test case test_stInt64Tuple_cmpFn
Running test case test_stInt64Tuple_equalsFn
Running test case test_stInt64Tuple_length
Running test case test_stInt64Tuple_getPosition
Running test case test_stDoubleTuple_construct
Running test case test_stDoubleTuple_hashKey
Running test case test_stDoubleTuple_cmpFn
Running test case test_stDoubleTuple_equalsFn
Running test case test_stDoubleTuple_length
Running test case test_stDoubleTuple_getPosition
Running test case test_stHash_search
Running test case test_stHash_remove
Running test case test_stHash_removeAndFreeKey
Running test case test_stHash_insert
Running test case test_stHash_size
Running test case test_stHash_testIterator
Running test case test_stHash_construct
Running test case test_stHash_testGetKeys
Running test case test_stHash_testGetValues
Running test case test_stSet_search
Running test case test_stSet_remove
Running test case test_stSet_removeAndFreeKey
Running test case test_stSet_insert
Running test case test_stSet_size
Running test case test_stSet_testIterator
Running test case test_stSet_construct
Running test case test_stSet_testGetKeys
Running test case test_stSet_getUnion
Running test case test_stSet_getIntersection
Running test case test_stSet_getDifference
Running test case test_stList_construct
Running test case test_stList_append
Running test case test_stList_appendAll
Running test case test_stList_length
Running test case test_stList_get
Running test case test_stList_set
Running test case test_stList_peek
Running test case test_stList_pop
Running test case test_stList_remove
Running test case test_stList_removeFirst
Running test case test_stList_contains
Running test case test_stList_copy
Running test case test_stList_reverse
Running test case test_stList_iterator
Running test case test_stList_nullList
Running test case test_stList_sort
Running test case test_stList_getSortedSet
Running test case test_stList_filter
Running test case test_stSortedSet_construct
Running test case test_stSortedSet_copyConstruct
Running test case test_stSortedSet
Running test case test_stSortedSetIterator
Running test case test_stSortedSetIterator_getIteratorFrom
Running test case test_stSortedSetEquals
Running test case test_stSortedSetIntersection
Running test case test_stSortedSetUnion
Running test case test_stSortedSetDifference
Running test case test_stSortedSet_searchLessThanOrEqual
Running test case test_stSortedSet_searchLessThan
Running test case test_stSortedSet_searchGreaterThanOrEqual
Running test case test_stSortedSet_searchGreaterThan
Running test case testThrow
Running test case testOk
Running test case testTryReturn
Running test case test_st_randomInt
Running test case test_st_randomInt_distribution_0
Running test case test_st_randomInt64_range_0
Running test case test_st_randomInt64_distribution_0
Running test case test_st_random
Running test case test_st_randomChoice
Running test case test_stCompression_compressAndDecompress_Lots
Running test case test_stCompression_compressAndDecompress_Big
Running test case test_stFile_getLineFromFile
Running test case test_stFile_pathJoin
Running test case test_stFile_exists
Running test case test_stFile_isDir
Running test case test_stFile_getFileNamesInDirectory
Running test case readAndUpdateRecord
Running test case readAndUpdateRecords
.F..........................................................................................................
There was 1 failure:
- test_st_system: tests/sonLibCommonTest.c:45: assert failed
!!!FAILURES!!!
Runs: 108 Passes: 107 Fails: 1
E
ERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase)
Traceback (most recent call last):
File "/home/gbio/sonLib/kvdbTest.py", line 18, in testSonLibKVTokyoCabinet
system("sonLib_kvDatabaseTest --type=tokyocabinet")
File "/home/gbio/sonLib/bioio.py", line 163, in system
raise RuntimeError("Command: %s exited with non-zero status %i" % (command, sts))
RuntimeError: Command: sonLib_kvDatabaseTest --type=tokyocabinet exited with non-zero status 128
ERROR: Run m,ost the sonLib CuTests, fail if any of them fail.
Traceback (most recent call last):
File "allTests.py", line 30, in testSonLibCTests
system("sonLibTests %s" % getLogLevelString())
File "/home/gbio/sonLib/bioio.py", line 163, in system
raise RuntimeError("Command: %s exited with non-zero status %i" % (command, sts))
RuntimeError: Command: sonLibTests CRITICAL exited with non-zero status 1
Ran 18 tests in 16.341s
FAILED (errors=2)
make: *** [test] Error 2
...running Tokyo Cabinet sonLibKVDatabase tests
Running test case readWriteAndRemoveRecords
Exception: ST_KV_DATABASE_EXCEPTION: requested Tokyo Cabinet database, however sonlib is not compiled with Tokyo Cabinet support
Uncaught exception
ERunning test case test_st_logging
OKAY This is important, really
OKAY Bar foo
OKAY This is important, really
OKAY Hello world
OKAY Bar foo
OKAY This is important, really
Running test case test_st_system
1
Running test case test_stTree_construct
Running test case test_stTree_getSetParent
Running test case test_stTree_getChildNumber
Running test case test_stTree_getChild
sh: Running test case test_stTree_getSetBranchLength
thisProgramDoesNotExist: not found
Running test case test_stTree_getSetClientData
Running test case test_stTree_newickTreeParser
Running test case test_stTree_label
Running test case test_stTree_getNumNodes
Running test case test_stTree_equals
Running test case test_stTree_clone
Running test case test_stString_copy
Running test case test_stString_print
Running test case test_stString_getNextWord
Running test case test_stString_replace
Running test case test_stString_join
Running test case test_stString_join2
Running test case test_stString_split
Running test case test_stString_getSubString
Running test case test_stIntTuple_construct
Running test case test_stIntTuple_hashKey
Running test case test_stIntTuple_cmpFn
Running test case test_stIntTuple_equalsFn
Running test case test_stIntTuple_length
Running test case test_stIntTuple_getPosition
Running test case test_stInt64Tuple_construct
Running test case test_stInt64Tuple_hashKey
Running test case test_stInt64Tuple_cmpFn
Running test case test_stInt64Tuple_equalsFn
Running test case test_stInt64Tuple_length
Running test case test_stInt64Tuple_getPosition
Running test case test_stDoubleTuple_construct
Running test case test_stDoubleTuple_hashKey
Running test case test_stDoubleTuple_cmpFn
Running test case test_stDoubleTuple_equalsFn
Running test case test_stDoubleTuple_length
Running test case test_stDoubleTuple_getPosition
Running test case test_stHash_search
Running test case test_stHash_remove
Running test case test_stHash_removeAndFreeKey
Running test case test_stHash_insert
Running test case test_stHash_size
Running test case test_stHash_testIterator
Running test case test_stHash_construct
Running test case test_stHash_testGetKeys
Running test case test_stHash_testGetValues
Running test case test_stSet_search
Running test case test_stSet_remove
Running test case test_stSet_removeAndFreeKey
Running test case test_stSet_insert
Running test case test_stSet_size
Running test case test_stSet_testIterator
Running test case test_stSet_construct
Running test case test_stSet_testGetKeys
Running test case test_stSet_getUnion
Running test case test_stSet_getIntersection
Running test case test_stSet_getDifference
Running test case test_stList_construct
Running test case test_stList_append
Running test case test_stList_appendAll
Running test case test_stList_length
Running test case test_stList_get
Running test case test_stList_set
Running test case test_stList_peek
Running test case test_stList_pop
Running test case test_stList_remove
Running test case test_stList_removeFirst
Running test case test_stList_contains
Running test case test_stList_copy
Running test case test_stList_reverse
Running test case test_stList_iterator
Running test case test_stList_nullList
Running test case test_stList_sort
Running test case test_stList_getSortedSet
Running test case test_stList_filter
Running test case test_stSortedSet_construct
Running test case test_stSortedSet_copyConstruct
Running test case test_stSortedSet
Running test case test_stSortedSetIterator
Running test case test_stSortedSetIterator_getIteratorFrom
Running test case test_stSortedSetEquals
Running test case test_stSortedSetIntersection
Running test case test_stSortedSetUnion
Running test case test_stSortedSetDifference
Running test case test_stSortedSet_searchLessThanOrEqual
Running test case test_stSortedSet_searchLessThan
Running test case test_stSortedSet_searchGreaterThanOrEqual
Running test case test_stSortedSet_searchGreaterThan
Running test case testThrow
Running test case testOk
Running test case testTryReturn
Running test case test_st_randomInt
Running test case test_st_randomInt_distribution_0
Running test case test_st_randomInt64_range_0
Running test case test_st_randomInt64_distribution_0
Running test case test_st_random
Running test case test_st_randomChoice
Running test case test_stCompression_compressAndDecompress_Lots
Running test case test_stCompression_compressAndDecompress_Big
Running test case test_stFile_getLineFromFile
Running test case test_stFile_pathJoin
Running test case test_stFile_exists
Running test case test_stFile_isDir
Running test case test_stFile_getFileNamesInDirectory
Running test case readAndUpdateRecord
Running test case readAndUpdateRecords
.F..........................................................................................................
There was 1 failure:
!!!FAILURES!!!
Runs: 108 Passes: 107 Fails: 1
E
ERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase)
Traceback (most recent call last):
File "/home/gbio/sonLib/kvdbTest.py", line 18, in testSonLibKVTokyoCabinet
system("sonLib_kvDatabaseTest --type=tokyocabinet")
File "/home/gbio/sonLib/bioio.py", line 163, in system
raise RuntimeError("Command: %s exited with non-zero status %i" % (command, sts))
RuntimeError: Command: sonLib_kvDatabaseTest --type=tokyocabinet exited with non-zero status 128
ERROR: Run m,ost the sonLib CuTests, fail if any of them fail.
Traceback (most recent call last):
File "allTests.py", line 30, in testSonLibCTests
system("sonLibTests %s" % getLogLevelString())
File "/home/gbio/sonLib/bioio.py", line 163, in system
raise RuntimeError("Command: %s exited with non-zero status %i" % (command, sts))
RuntimeError: Command: sonLibTests CRITICAL exited with non-zero status 1
Ran 18 tests in 16.341s
FAILED (errors=2)
make: *** [test] Error 2