Hi,
I am doing enrichment analysis for RNAseq and Protein datasets. It is not printing gene names in plot_enrichment_details. There are some dots appearing in black and many in gray but no names for black dots.
I used MSigDB_v6.0_C5_mouse feature set.
enrichment.parametric.RNA <- run_enrichment(model,
view = "RNA", factors = 1:7,
feature.sets = MSigDB_v6.0_C5_mouse,
sign = "positive",
statistical.test = "parametric"
)
Please suggest why? How can I download the enriched genes for sig pathways so that I can check manually?
Thank you,
Priya
Hi,
I am doing enrichment analysis for RNAseq and Protein datasets. It is not printing gene names in plot_enrichment_details. There are some dots appearing in black and many in gray but no names for black dots.
I used MSigDB_v6.0_C5_mouse feature set.
Please suggest why? How can I download the enriched genes for sig pathways so that I can check manually?
Thank you,
Priya