diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..915769f --- /dev/null +++ b/environment.yml @@ -0,0 +1,98 @@ +name: conGI +channels: + - https://conda.anaconda.org/gurobi + - defaults +dependencies: + - bzip2=1.0.8=h2bbff1b_6 + - ca-certificates=2024.9.24=haa95532_0 + - expat=2.6.3=h5da7b33_0 + - libffi=3.4.4=hd77b12b_1 + - openssl=3.0.15=h827c3e9_0 + - pip=24.2=py312haa95532_0 + - python=3.12.6=h14ffc60_1 + - setuptools=75.1.0=py312haa95532_0 + - sqlite=3.45.3=h2bbff1b_0 + - tk=8.6.14=h0416ee5_0 + - vc=14.40=h2eaa2aa_1 + - vs2015_runtime=14.40.33807=h98bb1dd_1 + - wheel=0.44.0=py312haa95532_0 + - xz=5.4.6=h8cc25b3_1 + - zlib=1.2.13=h8cc25b3_1 + - pip: + - absl-py==2.1.0 + - anndata==0.10.9 + - array-api-compat==1.9 + - certifi==2024.8.30 + - cffi==1.17.1 + - charset-normalizer==3.3.2 + - colorama==0.4.6 + - contourpy==1.3.0 + - cycler==0.12.1 + - filelock==3.16.1 + - fonttools==4.54.1 + - fsspec==2024.9.0 + - grpcio==1.66.2 + - h5py==3.12.1 + - huggingface-hub==0.25.1 + - idna==3.10 + - imageio==2.35.1 + - jinja2==3.1.4 + - joblib==1.4.2 + - kiwisolver==1.4.7 + - lazy-loader==0.4 + - legacy-api-wrap==1.4 + - llvmlite==0.43.0 + - lmdb==1.5.1 + - markdown==3.7 + - markupsafe==2.1.5 + - matplotlib==3.9.2 + - mpmath==1.3.0 + - natsort==8.4.0 + - networkx==3.3 + - numba==0.60.0 + - numpy==2.0.2 + - opencv-python==4.10.0.84 + - packaging==24.1 + - pandas==2.2.3 + - patsy==0.5.6 + - pillow==10.4.0 + - prettytable==3.11.0 + - protobuf==5.28.2 + - pyarrow==17.0.0 + - pycparser==2.22 + - pynndescent==0.5.13 + - pyparsing==3.1.4 + - python-dateutil==2.9.0.post0 + - pytz==2024.2 + - pyyaml==6.0.2 + - regex==2024.9.11 + - requests==2.32.3 + - rpy2==3.5.16 + - safetensors==0.4.5 + - scanpy==1.10.3 + - scikit-image==0.24.0 + - scikit-learn==1.5.2 + - scipy==1.14.1 + - seaborn==0.13.2 + - session-info==1.0.0 + - six==1.16.0 + - statsmodels==0.14.3 + - stdlib-list==0.10.0 + - sympy==1.13.3 + - tensorboard==2.18.0 + - tensorboard-data-server==0.7.2 + - threadpoolctl==3.5.0 + - tifffile==2024.9.20 + - tokenizers==0.20.0 + - torch==2.4.1 + - torchtoolbox==0.1.8.2 + - torchvision==0.19.1 + - tqdm==4.66.5 + - transformers==4.45.1 + - typing-extensions==4.12.2 + - tzdata==2024.2 + - tzlocal==5.2 + - umap-learn==0.5.6 + - urllib3==2.2.3 + - wcwidth==0.2.13 + - werkzeug==3.0.4