Hello,
I'm trying to run find_intersecting_snps.py on some paired-end Micro-C sequencing data. Micro-C pairs are often far apart and some of them are on different chromosomes. Does wasp work with these? I'm getting the following output:
DISCARD reads:
unmapped: 0
mate unmapped: 0
improper pair: 74367250
different chromosome: 48508356
indel: 0
secondary alignment: 21787311
supplementary alignment: 0
excess overlapping snps: 0
excess allelic combinations: 0
read pairs with discordant shared SNPs: 0
missing pairs (e.g. mismatched read names): 0
KEEP reads:
single-end: 0
pairs: 0
REMAP reads:
single-end: 0
pairs: 0
read SNP ref matches: 0
read SNP alt matches: 0
read SNP mismatches: 0
Hello,
I'm trying to run find_intersecting_snps.py on some paired-end Micro-C sequencing data. Micro-C pairs are often far apart and some of them are on different chromosomes. Does wasp work with these? I'm getting the following output:
DISCARD reads:
unmapped: 0
mate unmapped: 0
improper pair: 74367250
different chromosome: 48508356
indel: 0
secondary alignment: 21787311
supplementary alignment: 0
excess overlapping snps: 0
excess allelic combinations: 0
read pairs with discordant shared SNPs: 0
missing pairs (e.g. mismatched read names): 0
KEEP reads:
single-end: 0
pairs: 0
REMAP reads:
single-end: 0
pairs: 0
read SNP ref matches: 0
read SNP alt matches: 0
read SNP mismatches: 0