Support for GEMX 10x Droplet Data #435
Description
Hi CellBender Team,
We are testing the new GEMX 10x droplet technology, and we noticed that currently CellBender only supports V3 chemistry for processing 10x data.
From our tests, GEMX produces a large number of empty droplets that resemble real cells. Using the V3-based CellBender on GEMX data does not give satisfactory results.
We would like to request:
Official support for GEMX chemistry in CellBender.
Any recommendations or best practices for running CellBender on GEMX data until official support is available.
Thank you for your help and for maintaining CellBender!