How to try diiferent drugs?

[Eetenal]

I want to try different drugs, I change the command to

python ./scripts/train.py --outdir ./results/4i/drug-ulixertinib/model-cellot --config ./configs/tasks/4i.yaml --config ./configs/models/cellot.yaml --config.data.target ulixertinib

but I get some error:
C:\Anaconda3\Lib\site-packages\anndata_init_.py:52: FutureWarning: anndata.read is deprecated, use anndata.read_h5ad instead. ad.read will be removed in mid 2024.
warnings.warn(
C:\cellot_main\cellot\data\cell.py:259: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning.
groups = data.obs.groupby(groupby).groups
C:\cellot_main\cellot\data\cell.py:213: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning.
for key, index in data.obs[split_on].groupby(split_on).groups.items()
0%| | 0/100 [00:00<?, ?it/s]C:\cellot_main\cellot\train\summary.py:67: FutureWarning: Starting with pandas version 3.0 all arguments of to_hdf except for the argument 'path_or_buf' will be keyword-only.
df.to_hdf(self.path, self.key, append=True, format='table')
100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 100/100 [00:09<00:00, 10.52it/s]
Traceback (most recent call last):
File "C:\cellot_main\scripts\train.py", line 81, in
main(sys.argv)
File "C:\cellot_main\scripts\train.py", line 65, in main
train(outdir, config)
File "C:\cellot_main\cellot\train\train.py", line 165, in train_cellot
logger.flush()
File "C:\cellot_main\cellot\train\summary.py", line 25, in flush
logger.flush()
File "C:\cellot_main\cellot\train\summary.py", line 72, in flush
self._write()
File "C:\cellot_main\cellot\train\summary.py", line 66, in _write
df = pd.DataFrame(self.store).set_index('step')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Anaconda3\Lib\site-packages\pandas\core\frame.py", line 6122, in set_index
raise KeyError(f"None of {missing} are in the columns")
KeyError: "None of ['step'] are in the columns"

Is something wrong with my command? Could you please tell me how to deal with this issues?

[Eetenal]

In addition, I would like to ask if it is OK not to provide feature.txt when training and evaluating the model.

[Ralmohsen]

I think you can change drug in 4i.yaml by changing target from all to your specific drug, example: target: cisplatin