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Error: LD reference does not seem to match the coordinated SNP data #159

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@danjweiner

Hello! I receive this error during ldpred gibbs after ldpred coord runs just fine. Perplexingly, I get this error using some summary statistics but not others (same reference LD panel used in both instances), but am having a challenging time diagnosing the problem. Does anybody have insight on this? Thanks!

Screen Shot 2020-11-08 at 4 26 29 PM

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