IDE-2023/_output.yml at main · cbw-dev/IDE-2023 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
bookdown::gitbook:
  css: style.css # This is how bookdown knows to look at style.css for formatting
  pandoc_args:
    - "--lua-filter=callouts.lua"
  includes:                             # <<< ADDED/ENSURED THIS SECTION
    in_header:                           # <<<
      - fa-header.html                   # <<<
  config:
    toc: # Table of Contents
      collapse: subsection
      before: |
        <a href="https://bioinformaticsdotca.github.io/">
         <img src="img/bioinformatics_logo.png" width="90%" alt="bioinformatics.ca logo" style="display:block; margin-left:auto; margin-right:auto; margin-top:15px;">
         </a>
        <li><center><strong><a href="./"><br>Infectious Disease Genomic Epidemiology<br><br></a></strong></center></li>
        <a href="./">
         <img src="img/CBW_epidemiology_icon.png" width="70%" alt="Infectious Disease Genomic Epidemiology logo" style="display:block; margin-left:auto; margin-right:auto; ">
         </a>
        <br>

      after: |
        <h1 id="sponsors">Sponsors</h1>
        <center>
        <a href="https://genomecanada.ca/"><img src="img/sponsors/genomecanada.png" height="70" style="display:inline-block;"  style="padding-bottom: 20px" alt="Genome Canada logo.">
        <a href="https://www.ontariogenomics.ca/"><img src="img/sponsors/ontariogenomics.png" height="70" style="display:inline-block;" style="padding-bottom: 20px;" alt="Ontario Genomics logo.">
        <br><br>
        <a href="https://oicr.on.ca/"><img src="img/sponsors/oicr.png" width=25% style="display:inline-block;" style="padding-bottom: 20px" alt="Ontario Institute for Cancer Research logo.">
        <a href="https://www.hpcforhealth.ca/"><img src="img/sponsors/hpc4health.png" width=60% style="display:inline-block;" style="padding-bottom: 20px "alt="HPC4Health logo.">
        <br><br>
        <a href="https://www.cihr-irsc.gc.ca"><img src="img/sponsors/cihr.png" style="display:inline-block;" width=35% style="padding-bottom: 20px" alt="Canadian Institutes of Health Research logo."></a>

        <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li></center>

    # YOU MUST REPLACE THE LINK BELOW - This is a link to your index.Rmd on your GitHub repo, which allows people to make suggestions
    edit: https://github.com/bioinformaticsdotca/IDE_2023/blob/main/%s # Go to your index.Rmd page on GitHub, copy and paste the link to it, and add
    # Steps:
    # 1. Go to your index.Rmd page on GitHub, Copy and paste the link to it.
    # 2. Copy and paste the link to it, excluding the "index.Rmd" ending.
    # 3. Add "/%s" to the ending.
    # 4. Replace the above link.

    download: ["pdf", "epub"]
  number_sections: false
bookdown::pdf_book:
  includes:
    in_header: preamble.tex
  latex_engine: xelatex
  citation_package: natbib
  keep_tex: yes
bookdown::epub_book: default
bookdown::html_document2:
  css: style.css                         # <<< ADDED/ENSURED css line
  pandoc_args:
    - "--lua-filter=callouts.lua"
  includes:                             # <<< ADDED/ENSURED THIS SECTION
    in_header:                           # <<<
      - fa-header.html                   # <<<