It might be good to provide a map from gene expression data into a GRanges data structure so that comparison of copy number and expression values are straightforward. We can pull the coordinates from the corresponding TxDB object and annotate to the rowRanges of the SummarizedExperiment that stores the expression data.
It might be good to provide a map from gene expression data into a
GRangesdata structure so that comparison of copy number and expression values are straightforward. We can pull the coordinates from the correspondingTxDBobject and annotate to therowRangesof theSummarizedExperimentthat stores the expression data.