validateConfiguration

#!/usr/bin/env bash
#
# Script only works on Circle-CI

# identify the location of the script
rootdir=`dirname $0`       # may be relative path
rootdir=`cd $rootdir && pwd`    # ensure absolute path

# set classpath and log4j configuraiton
export CLASSPATH=${rootdir}/pkg/BioAssayConsole.jar 
export PROPS="${PROPS} -Dlog4j.configuration=file:${rootdir}/log4j.properties"

java ${PROPS} com.cdd.bae.main.ValidateConfiguration $*


#!/usr/bin/env bash

# Determine the directory of this script and based on this BAE and BAX
rootdir=`dirname $0`       # may be relative path
rootdir=`cd $rootdir && pwd`    # ensure absolute path
BAE=$rootdir
BAX=`dirname $rootdir`/bax

export LIB=$BAE/lib
export CLASSPATH=$BAE/web/WEB-INF/classes
CLASSPATH=$CLASSPATH:$BAX/bin:$BAX/pkg/BioAssayTemplateAPI.jar

# Configure logging using slf4j with log4j 1.2 backend
# CLASSPATH=$CLASSPATH:$BAX/lib/slf4j-api-1.7.25.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/slf4j-log4j12-1.7.25.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/log4j-1.2.17.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/apache-log4j-extras-1.2.17.jar

# Open-NLP models
# CLASSPATH=$CLASSPATH:$LIB/opennlp-maxent-3.0.3.jar
# CLASSPATH=$CLASSPATH:$LIB/opennlp-uima-1.5.3.jar
# CLASSPATH=$CLASSPATH:$LIB/opennlp-tools-1.5.3.jar

# RDF libraries
# CLASSPATH=$CLASSPATH:$BAX/lib/jena-arq-3.0.0.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/jena-base-3.0.0.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/jena-core-3.0.0.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/jena-iri-3.0.0.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/jena-shaded-guava-3.0.0.jar

# XML libraries
# CLASSPATH=$CLASSPATH:$BAX/lib/xercesImpl-2.11.0.jar
# CLASSPATH=$CLASSPATH:$BAX/lib/xml-apis-1.4.01.jar

# Apache commons
# CLASSPATH=$CLASSPATH:$BAX/lib/commons-lang3-3.3.2.jar

# java com.cdd.bae.main.ValidateConfiguration $*