data_simulation_lab_1/pixi.toml at main · chlee-hub/data_simulation_lab_1 · GitHub

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[workspace]
name = "data-simulation-lab-1"
version = "0.1.0"
authors = ["Bria Long"]
channels = ["conda-forge", "pytorch", "bioconda"]
platforms = ["osx-arm64", "osx-64"]
repository = "https://github.com/psyc-201/data_simulation_lab_1"

# Use pixi add someLibrary to install Python packages
# Use pixi add r-someLibrary to install R packages
# This file will be auto-updated for you!
[dependencies]
python = ">=3.11"
r-base = ">4.3"
numpy = ">=1.21.0"
pandas = ">=1.3.0"
scipy = ">=1.7.0"
matplotlib = ">=3.5.0"
seaborn = ">=0.13.2,<0.14"
ipykernel = ">=6.29.5,<7"
ruff = ">=0.12.2,<0.13"
jupyter = ">=1.1.1,<2"
quarto = ">=1.7.32,<2"
jupyter-cache = ">=1.0.1,<2"
r-tidyverse = ">=2.0.0,<3"
r-knitr = ">=1.50,<2"
r-languageserver = ">=0.3.16,<0.4"
r-rmarkdown = ">=2.29,<3"
r-irkernel = ">=1.3.2,<2"
r-rlang = ">=1.1.6,<2"
r-jsonlite = ">=2.0.0,<3"
r-hmisc = ">=5.2_4,<6"

# Python syntax-checking settings
[tool.ruff]
extend-include = ["*.ipynb", "*.qmd"]
[tool.ruff.lint]
ignore = ["W292", "E501", "E731", "E741", "F401", "E703"]

# Tasks are shell commands we can call with pixi run myTask
# We include some that configure the environment for you when you
# use pixi run setup
[tasks]
setup = [
{ task = "setup_rkernel" },
{ task = "setup_pykernel" }]

render = "quarto preview code/"
r = "R"

[tasks.preview]
args =["name"]
cmd = "quarto preview code/{{ name }}"

[tasks.convert]
args =["name"]
cmd = "quarto convert code/{{ name }}"

# Register an R kernelspec INSIDE THIS ENV (no HOME pollution).
# prefix := dirname(R.home('share')) → <env>/share/jupyter/kernels
[tasks.setup_rkernel]
cmd = """R -q -e "prefix <- normalizePath(file.path(R.home('home'), '..', '..')); IRkernel::installspec(name='data-simulation-lab-1-R', displayname='R (data-simulation-lab-1)', user=FALSE, prefix=prefix, verbose=TRUE)" """

# Register a Python kernelspec INSIDE THIS ENV (no HOME pollution).
# prefix := sysconfig.get_paths()['data'] → <env>/share/jupyter/kernels
[tasks.setup_pykernel]
cmd = "python -c \"import sys, sysconfig, subprocess; p=sysconfig.get_paths()['data']; subprocess.check_call([sys.executable,'-m','ipykernel','install','--name','data-simulation-lab-1-py','--display-name','Python (data-simulation-lab-1)','--prefix',p])\""

[tasks.kernels]
cmd = "jupyter kernelspec list"