I am getting the following KeyError for some fasta files(1 in 4-5 files, the rest run fine):
Building a SMALL index
Traceback (most recent call last):
File "/opt/bin/bio/ra2.py", line 1117, in
add_Ns = args['add_Ns'], mask = args['mask'], ignore_insert = args['ignore_insert_cov'], window = window)
File "/opt/bin/bio/ra2.py", line 984, in curate_assembly
add_Ns, mask, ignore_insert)
File "/opt/bin/bio/ra2.py", line 782, in merge_assemblies
merged = patch_contig(seq, s2c[id], errors, re_assembled[id], cov_thresh)
KeyError: 'XXXXX(scaffold name)'
Any idea why this is the case? I am running this with the parameters -m 5 -c 6 for read lengths of 250bp. Thanks in advance!
I am getting the following KeyError for some fasta files(1 in 4-5 files, the rest run fine):
Building a SMALL index
Traceback (most recent call last):
File "/opt/bin/bio/ra2.py", line 1117, in
add_Ns = args['add_Ns'], mask = args['mask'], ignore_insert = args['ignore_insert_cov'], window = window)
File "/opt/bin/bio/ra2.py", line 984, in curate_assembly
add_Ns, mask, ignore_insert)
File "/opt/bin/bio/ra2.py", line 782, in merge_assemblies
merged = patch_contig(seq, s2c[id], errors, re_assembled[id], cov_thresh)
KeyError: 'XXXXX(scaffold name)'
Any idea why this is the case? I am running this with the parameters -m 5 -c 6 for read lengths of 250bp. Thanks in advance!