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pretraining.py
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94 lines (78 loc) · 3.24 KB
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import torch
from tqdm import tqdm
import numpy as np
import os
from data.Dataloader import get_train_dataloaders, get_val_dataloaders
import argparse
import wandb
import yaml
from utils.pretraining_engine import train_epoch, eval_epoch
from models.builder import build_model
import os
import random
def set_deterministic():
seed = 42
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
def main():
with wandb.init(project="pretraining", config=CONFIG):
config = wandb.config
save_path = f'{config.save_path}/{config.mode}_masking_{config.mtan_masking}/{config.lr}/'
os.makedirs(save_path, exist_ok=True)
# get dataloaders
train_dl = get_train_dataloaders(data_path=config.data_path,
batch_size=config.batch_size,
timepoints=config.timepoints,
complete=True,
system=config.system)
val_dl = get_val_dataloaders(data_path=config.data_path,
val_batch_size=config.val_batch_size,
timepoints=config.timepoints,
complete=True,
system=config.system)
# model set-up
model = build_model(mtan_masking=config.mtan_masking, filters=config.filters, device=config.device)
optimizer = torch.optim.Adam(model.parameters(), lr=config.lr)
for epoch in tqdm(range(1,config.epochs+1)):
train_losses = train_epoch(
model = model,
loader=train_dl,
optimizer=optimizer,
timepoints=config.timepoints,
device=config.device,
mode=config.mode,
align_labels=config.align_labels
)
val_losses = eval_epoch(
model=model,
loader=val_dl,
timepoints=config.timepoints,
device=config.device,
align_labels=config.align_labels,
mode=config.mode
)
wandb.log({
'train_total_loss': train_losses['total'],
'train_sup_loss': train_losses['sup'],
'train_rec_loss': train_losses['rec'],
'train_temp_loss': train_losses['temp'],
'val_temp_loss': val_losses['temp'],
'val_rec_loss': val_losses['rec'],
'val_sup_loss': val_losses['sup'],
})
torch.save(model.state_dict(), save_path+'model.pkl')
if __name__ == '__main__':
set_deterministic()
parser = argparse.ArgumentParser()
parser.add_argument('--config', type=str,
help='path to wadb sweep config')
ARGS = parser.parse_args()
with open(ARGS.config, 'r') as file:
CONFIG = yaml.safe_load(file)
# Initialize a sweep
sweep_id = wandb.sweep(CONFIG, project="pretraining")
wandb.agent(sweep_id, function=main)