From 64d4b4f16f609f7ad04286fa2aeac1147988939f Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 19 Jan 2026 03:49:59 +0000
Subject: [PATCH 1/3] Update black requirement from ==25.* to ==26.*

Updates the requirements on [black](https://github.com/psf/black) to permit the latest version.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/25.1.0...26.1.0)

---
updated-dependencies:
- dependency-name: black
  dependency-version: 26.1.0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 lint-requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lint-requirements.txt b/lint-requirements.txt
index 1800b69b..7607a498 100644
--- a/lint-requirements.txt
+++ b/lint-requirements.txt
@@ -1,4 +1,4 @@
 flake8-bugbear < 25.12
-black == 25.*
+black == 26.*
 codespell
 isort >= 5

From 1bb5e300cd86535004f14e0e40d7bc6ad17d3e87 Mon Sep 17 00:00:00 2001
From: "Michael R. Crusoe" <michael.crusoe@gmail.com>
Date: Mon, 30 Mar 2026 17:24:50 +0200
Subject: [PATCH 2/3] black 2026 reformat

---
 cwl_utils/__meta__.py                     | 1 +
 cwl_utils/cwl_v1_0_expression_refactor.py | 1 +
 cwl_utils/cwl_v1_1_expression_refactor.py | 1 +
 cwl_utils/cwl_v1_2_expression_refactor.py | 1 +
 cwl_utils/expression.py                   | 1 +
 cwl_utils/expression_refactor.py          | 1 +
 cwl_utils/file_formats.py                 | 1 -
 cwl_utils/image_puller.py                 | 1 +
 cwl_utils/inputs_schema_gen.py            | 1 +
 cwl_utils/loghandler.py                   | 1 +
 cwl_utils/normalizer.py                   | 1 +
 cwl_utils/parser/cwl_v1_0_utils.py        | 2 +-
 cwl_utils/parser/cwl_v1_1_utils.py        | 2 +-
 cwl_utils/parser/cwl_v1_2_utils.py        | 2 +-
 cwl_utils/parser/utils.py                 | 1 +
 cwl_utils/schemadef.py                    | 1 -
 cwl_utils/tests/test_cite_extract.py      | 1 +
 cwl_utils/tests/test_docker_extract.py    | 6 ++----
 cwl_utils/tests/test_etools_to_clt.py     | 1 +
 cwl_utils/tests/test_examples.py          | 1 +
 cwl_utils/tests/test_graph_split.py       | 1 +
 cwl_utils/tests/test_inputs_schema_gen.py | 1 +
 cwl_utils/tests/test_parser_utils.py      | 3 ++-
 cwl_utils/tests/test_subscope.py          | 1 -
 cwl_utils/types.py                        | 1 +
 cwl_utils/utils.py                        | 1 +
 26 files changed, 25 insertions(+), 11 deletions(-)

diff --git a/cwl_utils/__meta__.py b/cwl_utils/__meta__.py
index 5c640b49..6f5c4fd6 100644
--- a/cwl_utils/__meta__.py
+++ b/cwl_utils/__meta__.py
@@ -1,3 +1,4 @@
 # SPDX-License-Identifier: Apache-2.0
 """Global version number for the cwl_utils package."""
+
 __version__ = "0.41"
diff --git a/cwl_utils/cwl_v1_0_expression_refactor.py b/cwl_utils/cwl_v1_0_expression_refactor.py
index c66e7d6f..1446319a 100755
--- a/cwl_utils/cwl_v1_0_expression_refactor.py
+++ b/cwl_utils/cwl_v1_0_expression_refactor.py
@@ -2,6 +2,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # Copyright 2018-2021 Michael R. Crusoe
 """CWL Expression refactoring tool for CWL v1.0 ."""
+
 import copy
 import hashlib
 import uuid
diff --git a/cwl_utils/cwl_v1_1_expression_refactor.py b/cwl_utils/cwl_v1_1_expression_refactor.py
index 3f260e56..1bedf4c2 100755
--- a/cwl_utils/cwl_v1_1_expression_refactor.py
+++ b/cwl_utils/cwl_v1_1_expression_refactor.py
@@ -2,6 +2,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # Copyright 2018-2021 Michael R. Crusoe
 """CWL Expression refactoring tool for CWL v1.1 ."""
+
 import copy
 import hashlib
 import uuid
diff --git a/cwl_utils/cwl_v1_2_expression_refactor.py b/cwl_utils/cwl_v1_2_expression_refactor.py
index 3d7f86e7..1fd73d74 100755
--- a/cwl_utils/cwl_v1_2_expression_refactor.py
+++ b/cwl_utils/cwl_v1_2_expression_refactor.py
@@ -2,6 +2,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # Copyright 2018-2021 Michael R. Crusoe
 """CWL Expression refactoring tool for CWL v1.2 ."""
+
 import copy
 import hashlib
 import uuid
diff --git a/cwl_utils/expression.py b/cwl_utils/expression.py
index c5a3c39c..0b74a44d 100644
--- a/cwl_utils/expression.py
+++ b/cwl_utils/expression.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """CWL Expression parsing."""
+
 import asyncio
 import inspect
 import json
diff --git a/cwl_utils/expression_refactor.py b/cwl_utils/expression_refactor.py
index 6439be9f..094f5810 100755
--- a/cwl_utils/expression_refactor.py
+++ b/cwl_utils/expression_refactor.py
@@ -2,6 +2,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # Copyright 2018-2021 Michael R. Crusoe
 """CWL Expression refactoring tool for CWL."""
+
 import argparse
 import logging
 import shutil
diff --git a/cwl_utils/file_formats.py b/cwl_utils/file_formats.py
index 1cec4ba6..8c1b51f0 100644
--- a/cwl_utils/file_formats.py
+++ b/cwl_utils/file_formats.py
@@ -5,7 +5,6 @@
 For more information, please visit https://www.commonwl.org/user_guide/16-file-formats/
 """
 
-
 from rdflib import OWL, RDFS, Graph, URIRef
 from schema_salad.exceptions import ValidationException
 from schema_salad.utils import aslist, json_dumps
diff --git a/cwl_utils/image_puller.py b/cwl_utils/image_puller.py
index cb7be35b..5604002d 100644
--- a/cwl_utils/image_puller.py
+++ b/cwl_utils/image_puller.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Classes for docker-extract."""
+
 import logging
 import subprocess  # nosec
 from abc import ABC, abstractmethod
diff --git a/cwl_utils/inputs_schema_gen.py b/cwl_utils/inputs_schema_gen.py
index d78228f8..3f7304d5 100644
--- a/cwl_utils/inputs_schema_gen.py
+++ b/cwl_utils/inputs_schema_gen.py
@@ -4,6 +4,7 @@
 # Copyright 2024 Alexis Lucattini
 
 """Generate JSON Schema from CWL inputs object."""
+
 import argparse
 import json
 import logging
diff --git a/cwl_utils/loghandler.py b/cwl_utils/loghandler.py
index d7f5c221..9e590c6d 100644
--- a/cwl_utils/loghandler.py
+++ b/cwl_utils/loghandler.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Shared logging object."""
+
 import logging
 
 _logger = logging.getLogger("cwl_utils")  # pylint: disable=invalid-name
diff --git a/cwl_utils/normalizer.py b/cwl_utils/normalizer.py
index c0613e45..9e5107b3 100644
--- a/cwl_utils/normalizer.py
+++ b/cwl_utils/normalizer.py
@@ -2,6 +2,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # Copyright 2021 Michael R. Crusoe
 """Normalize CWL documents to CWL v1.2, JSON style."""
+
 import argparse
 import logging
 import sys
diff --git a/cwl_utils/parser/cwl_v1_0_utils.py b/cwl_utils/parser/cwl_v1_0_utils.py
index 2400298b..af1df11b 100644
--- a/cwl_utils/parser/cwl_v1_0_utils.py
+++ b/cwl_utils/parser/cwl_v1_0_utils.py
@@ -5,7 +5,7 @@
 from collections.abc import MutableMapping, MutableSequence
 from io import StringIO
 from pathlib import Path
-from typing import Any, IO, cast
+from typing import IO, Any, cast
 from urllib.parse import urldefrag
 
 from schema_salad.exceptions import ValidationException
diff --git a/cwl_utils/parser/cwl_v1_1_utils.py b/cwl_utils/parser/cwl_v1_1_utils.py
index 79ce337b..62265819 100644
--- a/cwl_utils/parser/cwl_v1_1_utils.py
+++ b/cwl_utils/parser/cwl_v1_1_utils.py
@@ -5,7 +5,7 @@
 from collections.abc import MutableMapping, MutableSequence
 from io import StringIO
 from pathlib import Path
-from typing import Any, IO, cast
+from typing import IO, Any, cast
 from urllib.parse import urldefrag
 
 from schema_salad.exceptions import ValidationException
diff --git a/cwl_utils/parser/cwl_v1_2_utils.py b/cwl_utils/parser/cwl_v1_2_utils.py
index 2eb45685..f770da8f 100644
--- a/cwl_utils/parser/cwl_v1_2_utils.py
+++ b/cwl_utils/parser/cwl_v1_2_utils.py
@@ -5,7 +5,7 @@
 from collections.abc import MutableMapping, MutableSequence
 from io import StringIO
 from pathlib import Path
-from typing import Any, IO, cast
+from typing import IO, Any, cast
 from urllib.parse import urldefrag
 
 from schema_salad.exceptions import ValidationException
diff --git a/cwl_utils/parser/utils.py b/cwl_utils/parser/utils.py
index 6849afd9..967beb12 100644
--- a/cwl_utils/parser/utils.py
+++ b/cwl_utils/parser/utils.py
@@ -14,6 +14,7 @@
 
 import cwl_utils
 import cwl_utils.parser
+
 from . import (
     LoadingOptions,
     Process,
diff --git a/cwl_utils/schemadef.py b/cwl_utils/schemadef.py
index 14b0e25a..9c72dd6e 100644
--- a/cwl_utils/schemadef.py
+++ b/cwl_utils/schemadef.py
@@ -15,7 +15,6 @@
 From https://github.com/rabix/sbpack/blob/b8404a0859ffcbe1edae6d8f934e51847b003320/sbpack/lib.py
 """
 
-
 import sys
 import urllib.parse
 from copy import deepcopy
diff --git a/cwl_utils/tests/test_cite_extract.py b/cwl_utils/tests/test_cite_extract.py
index a0933aef..1a061166 100644
--- a/cwl_utils/tests/test_cite_extract.py
+++ b/cwl_utils/tests/test_cite_extract.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Tests for cwl-cite-extract."""
+
 import pytest
 
 from cwl_utils.cite_extract import arg_parser, run
diff --git a/cwl_utils/tests/test_docker_extract.py b/cwl_utils/tests/test_docker_extract.py
index 8da8b11e..b675c84a 100644
--- a/cwl_utils/tests/test_docker_extract.py
+++ b/cwl_utils/tests/test_docker_extract.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Tests for cwl-docker-extract."""
+
 from pathlib import Path
 
 import pytest
@@ -92,13 +93,10 @@ def test_container_extraction_no_dockerPull(
     assert len(reqs) == 1
     assert len(list(tmp_path.iterdir())) == 0
     captured = capsys.readouterr()
-    assert (
-        captured.err
-        == """Unable to save image from due to lack of 'dockerPull':
+    assert captured.err == """Unable to save image from due to lack of 'dockerPull':
 class: DockerRequirement
 dockerImageId: 'debian:stable-slim.img'
 """
-    )
 
 
 @pytest.mark.parametrize(
diff --git a/cwl_utils/tests/test_etools_to_clt.py b/cwl_utils/tests/test_etools_to_clt.py
index 749cd372..10a9e774 100644
--- a/cwl_utils/tests/test_etools_to_clt.py
+++ b/cwl_utils/tests/test_etools_to_clt.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Test the CWL Expression refactoring tool."""
+
 import shutil
 import sys
 import tarfile
diff --git a/cwl_utils/tests/test_examples.py b/cwl_utils/tests/test_examples.py
index 3c812743..b7be8cb7 100644
--- a/cwl_utils/tests/test_examples.py
+++ b/cwl_utils/tests/test_examples.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Tests of example Python scripts."""
+
 import os
 import runpy
 from importlib.resources import as_file, files
diff --git a/cwl_utils/tests/test_graph_split.py b/cwl_utils/tests/test_graph_split.py
index bcf96070..732440f2 100644
--- a/cwl_utils/tests/test_graph_split.py
+++ b/cwl_utils/tests/test_graph_split.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Test the CWL $graph document splitter tool."""
+
 import json
 from io import StringIO
 from pathlib import Path
diff --git a/cwl_utils/tests/test_inputs_schema_gen.py b/cwl_utils/tests/test_inputs_schema_gen.py
index 09f0d2c8..23bc58ea 100644
--- a/cwl_utils/tests/test_inputs_schema_gen.py
+++ b/cwl_utils/tests/test_inputs_schema_gen.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Tests for cwl-inputs-schema-gen."""
+
 from pathlib import Path
 
 import pytest
diff --git a/cwl_utils/tests/test_parser_utils.py b/cwl_utils/tests/test_parser_utils.py
index 8594b7e0..d977ec75 100644
--- a/cwl_utils/tests/test_parser_utils.py
+++ b/cwl_utils/tests/test_parser_utils.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Test the CWL parsers utility functions."""
+
 import logging
 import re
 import tempfile
@@ -7,7 +8,7 @@
 from typing import cast
 
 import pytest
-from pytest import raises, LogCaptureFixture
+from pytest import LogCaptureFixture, raises
 from schema_salad.exceptions import ValidationException
 
 import cwl_utils.parser.cwl_v1_0
diff --git a/cwl_utils/tests/test_subscope.py b/cwl_utils/tests/test_subscope.py
index 2f7d4d50..d50bf958 100644
--- a/cwl_utils/tests/test_subscope.py
+++ b/cwl_utils/tests/test_subscope.py
@@ -1,7 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Test that scoping of identifiers in Workflow.steps[].run is correct."""
 
-
 from cwl_utils.parser import Workflow, load_document_by_uri
 
 from .util import get_path
diff --git a/cwl_utils/types.py b/cwl_utils/types.py
index e2cc2cf5..6b7b0d83 100644
--- a/cwl_utils/types.py
+++ b/cwl_utils/types.py
@@ -1,6 +1,7 @@
 # SPDX-License-Identifier: Apache-2.0
 # From https://github.com/rabix/sbpack/blob/b8404a0859ffcbe1edae6d8f934e51847b003320/sbpack/lib.py
 """Shared Python type definitions for commons JSON like CWL objects."""
+
 import sys
 from collections.abc import Mapping, MutableMapping, MutableSequence
 from typing import Any, Literal, TypeAlias, TypedDict, TypeGuard
diff --git a/cwl_utils/utils.py b/cwl_utils/utils.py
index a535fcfb..0db35819 100644
--- a/cwl_utils/utils.py
+++ b/cwl_utils/utils.py
@@ -1,5 +1,6 @@
 # SPDX-License-Identifier: Apache-2.0
 """Miscellaneous utility functions."""
+
 import pathlib
 import subprocess  # nosec
 import sys

From f96a7b883d9cae6eb17e80b5cd021d4ebd92f7e8 Mon Sep 17 00:00:00 2001
From: "Michael R. Crusoe" <michael.crusoe@gmail.com>
Date: Mon, 30 Mar 2026 17:25:15 +0200
Subject: [PATCH 3/3] ignore the black 2026 reformat in git blame

---
 .git-blame-ignore-revs | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.git-blame-ignore-revs b/.git-blame-ignore-revs
index 6730a1e9..48a331c4 100644
--- a/.git-blame-ignore-revs
+++ b/.git-blame-ignore-revs
@@ -6,3 +6,6 @@ af096c2301d5ae81daa41bf0b96417cebda76d05
 
 # black 2025 + isort
 512ad4373d78412a12a8301f5efeef8a31e669e7
+
+# black 2026 + isort
+1bb5e300cd86535004f14e0e40d7bc6ad17d3e87