diff --git a/README.md b/README.md
index f471502..e8443c7 100644
--- a/README.md
+++ b/README.md
@@ -105,13 +105,12 @@ The input to *FEAST* is composed of two tab-delimited ASCII text files:
 
 count matrix (first 4 rows and columns):
 
-| | ERR525698 |ERR525693 | ERR525688| ERR525699|
+| | taxa_1 |taxa_2 | taxa_3| taxa_4|
 | ------------- | ------------- |------------- |------------- |------------- |
-| taxa_1  |  0 | 5 | 0|20 |
-| taxa_2  |  15 | 5 | 0|0 |
-| taxa_3  |  0 | 13 | 200|0 |
-| taxa_4  |  4 | 5 | 0|0 |
-
+| ERR525698  |  0 | 5 | 0| 20 |
+| ERR525693  |  15 | 5 | 0 | 0 |
+| ERR525688  |  0 | 13 | 200 | 0 |
+| ERR525699  |  4 | 5 | 0 | 20 |
 
 
 (2) metadata - An m by 3 table, where m is the number of samples. The metadata table has three columns (i.e., 'Env', 'SourceSink', 'id'). The first column is a description of the sampled environment (e.g., human gut), the second column indicates if this sample is a source or a sink (can take the value 'Source' or 'Sink'). The third column is the Sink-Source id. When using multiple sinks, each tested with the same group of sources, only the rows with 'SourceSink' = Sink will get an id (between 1 - number of sinks in the data). In this scenario, the sources’ ids are blank. When using multiple sinks, each tested with a distinct group of sources, each combination of sink and its corresponding sources should get the same id (between 1 - number of sinks in the data). Note that these names must be respected.
diff --git a/vignettes/FEAST_example.Rmd b/vignettes/FEAST_example.Rmd
index 2c8fa13..4cc9c35 100644
--- a/vignettes/FEAST_example.Rmd
+++ b/vignettes/FEAST_example.Rmd
@@ -32,14 +32,11 @@ lapply(Packages, library, character.only = TRUE)
 install *FEAST* using devtools
 
 ```{r install_FEAST, echo=T, results='hide', message=F, warning=F}
-devtools::install_github("cozygene/FEAST", ref = "FEAST_beta")
+#devtools::install_github("cozygene/FEAST")
 ```
 
-
-
 ```{r load, echo=T, results='hide', message=F, warning=F}
 library(FEAST)
-
 ```
 
 ## Input Format
@@ -53,8 +50,8 @@ The input to *FEAST* is composed of two tab-separated ASCII text files :
 Load the datasets as follows:
 
 ```{r example_input}
-metadata <- Load_metadata(metadata_path = "~/FEAST/Data_files/metadata_example_multi.txt")
-otus <- Load_CountMatrix(CountMatrix_path = "~/FEAST/Data_files/otu_example_multi.txt")
+metadata <- Load_metadata(metadata_path = "../../FEAST/Data_files/metadata_example_multi.txt")
+otus <- Load_CountMatrix(CountMatrix_path = "../../FEAST/Data_files/otu_example_multi.txt")
 ```
 
 
@@ -73,7 +70,7 @@ As input, *FEAST* takes mandatory arguments:
 Run FEAST, saving the output with prefix "demo".
 
 ```{r analyze_example}
-FEAST_output <- FEAST(C = otus, metadata = metadata, different_sources_flag = 1, dir_path = "~/FEAST/Data_files/",
+FEAST_output <- FEAST(C = otus, metadata = metadata, different_sources_flag = 1, dir_path = "../../FEAST/Data_files/",
                       outfile="demo")
 
 ```